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Regulatory RNAs in bacteria
scientific article
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instance of
scholarly article
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review article
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stated in
Europe PubMed Central
title
Regulatory RNAs in bacteria
(English)
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main subject
bacteria
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based on heuristic
inferred from title
author name string
Lauren S Waters
series ordinal
1
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Gisela Storz
series ordinal
2
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language of work or name
English
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publication date
20 February 2009
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published in
Cell
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volume
136
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issue
4
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page(s)
615-28
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cites work
Small toxic proteins and the antisense RNAs that repress them
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The 5' end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator
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A small-RNA-mediated negative feedback loop controls quorum-sensing dynamics in Vibrio harveyi
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Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq
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Repression of small toxic protein synthesis by the Sib and OhsC small RNAs
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A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesicles
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Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translation
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The small RNA GlmY acts upstream of the sRNA GlmZ in the activation of glmS expression and is subject to regulation by polyadenylation in Escherichia coli
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Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence
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Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism
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An antisense RNA controls synthesis of an SOS-induced toxin evolved from an antitoxin
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Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets
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Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains
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Implication of membrane localization of target mRNA in the action of a small RNA: mechanism of post-transcriptional regulation of glucose transporter in Escherichia coli
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GadY, a small-RNA regulator of acid response genes in Escherichia coli
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Identification of tandem duplicate regulatory small RNAs in Pseudomonas aeruginosa involved in iron homeostasis
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Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus.
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A unique mechanism regulating gene expression: translational inhibition by a complementary RNA transcript (micRNA)
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CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes
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Small RNA binding to 5' mRNA coding region inhibits translational initiation
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Noncoding RNA control of the making and breaking of sugars
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Effect of Hfq on RprA-rpoS mRNA pairing: Hfq-RNA binding and the influence of the 5' rpoS mRNA leader region
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The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA
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Feedback control of glucosamine-6-phosphate synthase GlmS expression depends on the small RNA GlmZ and involves the novel protein YhbJ in Escherichia coli
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Quantitative characteristics of gene regulation by small RNA
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The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis
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RyhB, an iron-responsive small RNA molecule, regulates Shigella dysenteriae virulence
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Mechanism of RNA silencing by Hfq-binding small RNAs
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CsrB sRNA family: sequestration of RNA-binding regulatory proteins
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RNA antitoxins
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Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq
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Effect of RyhB small RNA on global iron use in Escherichia coli
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Micros for microbes: non-coding regulatory RNAs in bacteria
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A highly conserved 6S RNA structure is required for regulation of transcription
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The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae
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24 March 2017
Global analysis of small RNA and mRNA targets of Hfq
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An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes
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The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli
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CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
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RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs
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Gene regulation by riboswitches
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27 September 2017
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27 September 2017
Beyond silencing--engineering applications of RNA interference and antisense technology for altering cellular phenotype
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27 September 2017
Quorum sensing in staphylococci
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27 September 2017
RNA, but not protein partners, is directly responsible for translational silencing by a bacterial Hfq-binding small RNA.
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27 September 2017
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27 September 2017
A negative feedback loop involving small RNAs accelerates Vibrio cholerae's transition out of quorum-sensing mode.
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The post-transcriptional regulator CsrA plays a central role in the adaptation of bacterial pathogens to different stages of infection in animal hosts
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Regulatory small RNAs circumvent the conventional quorum sensing pathway in pandemic Vibrio cholerae.
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stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
Identification of bacterial small non-coding RNAs: experimental approaches
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
SigmaE regulates and is regulated by a small RNA in Escherichia coli
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
Hfq structure, function and ligand binding
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
The role of small RNAs in quorum sensing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
Regulatory mechanisms employed by cis-encoded antisense RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
Small RNAs controlling iron metabolism
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
Small noncoding RNAs controlling pathogenesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
Identification of small RNAs in diverse bacterial species
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
6S RNA: a small RNA regulator of transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
Small RNAs controlling outer membrane porins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
Transcription termination within the iron transport-biosynthesis operon of Vibrio anguillarum requires an antisense RNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
The tmRNA system for translational surveillance and ribosome rescue.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
Multiple small RNAs act additively to integrate sensory information and control quorum sensing in Vibrio harveyi.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
Riboswitches as antibacterial drug targets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
From ribosome to riboswitch: control of gene expression in bacteria by RNA structural rearrangements
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
Bacterial RNase P: a new view of an ancient enzyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
RNA synthetic biology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
The role of RNAs in the regulation of virulence-gene expression.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
The riboswitch control of bacterial metabolism
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
Antisense RNAs in bacteria and their genetic elements
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
Small RNAs in Escherichia coli.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
RNAs involved in copy-number control and incompatibility of plasmid R1
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
Inhibition of ColE1 RNA primer formation by a plasmid-specified small RNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
A Csr-type regulatory system, including small non-coding RNAs, regulates the global virulence regulator RovA of Yersinia pseudotuberculosis through RovM.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
27 September 2017
Characterization of the role of ribonucleases in Salmonella small RNA decay
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
30 May 2018
Regulation of gene expression by small non-coding RNAs: a quantitative view
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
30 May 2018
Studies on the function of the riboregulator 6S RNA from E. coli: RNA polymerase binding, inhibition of in vitro transcription and synthesis of RNA-directed de novo transcripts
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
30 May 2018
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
30 May 2018
The RNase E of Escherichia coli is a membrane-binding protein
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
28 November 2018
GadX/GadW-dependent regulation of the Escherichia coli acid fitness island: transcriptional control at the gadY-gadW divergent promoters and identification of four novel 42 bp GadX/GadW-specific binding sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
28 November 2018
Down-regulation of outer membrane proteins by noncoding RNAs: unraveling the cAMP-CRP- and sigmaE-dependent CyaR-ompX regulatory case.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
28 November 2018
Isolation of small RNA-binding proteins from E. coli: evidence for frequent interaction of RNAs with RNA polymerase
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
28 November 2018
Efficient degradation and expression prioritization with small RNAs.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
28 November 2018
Synthesis-mediated release of a small RNA inhibitor of RNA polymerase.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
28 November 2018
The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
28 November 2018
Interaction of Escherichia coli RNA polymerase with the ribosomal protein S1 and the Sm-like ATPase Hfq.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3132550
retrieved
28 November 2018
Translational control of IS10 transposition
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19239884
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Gene dosage compensation calibrates four regulatory RNAs to control Vibrio cholerae quorum sensing
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FJ.CELL.2009.01.043
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1016/J.CELL.2009.01.043
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
970453
Fatcat ID
release_bvvunjddazb4rorxvrikouilsa
0 references
OpenCitations bibliographic resource ID
970453
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
970453
PMCID
3132550
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
970453
PubMed ID
19239884
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
970453
ResearchGate publication ID
24037484
0 references
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