(Q24598325)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21536722%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

title

De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21536722%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

0 references

1

1 reference

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30 January 2020

Yongbo Wang

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21536722%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Guido Mastrobuoni

4

1 reference

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30 January 2020

Xintian You

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21536722%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Dominic Tolle

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21536722%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Nikolaus Rajewsky

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21536722%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Wei Chen

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21536722%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

author name string

Dominic Gruen

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21536722%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Matthias Dodt

7

1 reference

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30 January 2020

Sebastian D Mackowiak

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21536722%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Andreas Gogol-Doering

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21536722%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Pinar Oenal

10

1 reference

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30 January 2020

Agnieszka Rybak

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21536722%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Eric Ross

12

1 reference

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30 January 2020

Alejandro Sánchez Alvarado

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21536722%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Stefan Kempa

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21536722%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Christoph Dieterich

15

1 reference

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30 January 2020

language of work or name

English

0 references

publication date

2 May 2011

1 reference

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30 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21536722%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

volume

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21536722%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

page(s)

1193-1200

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21536722%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

issue

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21536722%20AND%20SRC:MED&resulttype=core&format=json

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

30 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

De novo assembly of human genomes with massively parallel short read sequencing

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

The sequence and de novo assembly of the giant panda genome

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

Automated generation of heuristics for biological sequence comparison

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

A novel method for SNP detection using a new duplex-specific nuclease from crab hepatopancreas

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

BLAT—The BLAST-Like Alignment Tool

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

Mapping and quantifying mammalian transcriptomes by RNA-Seq

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

Probability-based protein identification by searching sequence databases using mass spectrometry data

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

Fundamentals of planarian regeneration

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

De novo characterization of a whitefly transcriptome and analysis of its gene expression during development.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

Bilaterian phylogeny: a broad sampling of 13 nuclear genes provides a new Lophotrochozoa phylogeny and supports a paraphyletic basal acoelomorpha

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

High-resolution profiling and discovery of planarian small RNAs.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

Stem cells and regeneration in planarians

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

Planarians, a tale of stem cells.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

SmedGD: the Schmidtea mediterranea genome database

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

Planarian regeneration: its end is its beginning

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

The planarian Schmidtea mediterranea as a model for epigenetic germ cell specification: analysis of ESTs from the hermaphroditic strain

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

Simple cDNA normalization using kamchatka crab duplex-specific nuclease

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

Regeneration and gene regulation in planarians.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

Not your father's planarian: a classic model enters the era of functional genomics.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

Spliced-leader trans-splicing in freshwater planarians

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

Expression and functional analysis of musashi-like genes in planarian CNS regeneration.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

Automatic clustering of orthologs and inparalogs shared by multiple proteomes.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

SMEDWI-2 is a PIWI-like protein that regulates planarian stem cells.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

Planarian Gtsix3, a member of the Six/so gene family, is expressed in brain branches but not in eye cells.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3129261

Planarian Gtsix3, a member of the Six/so gene family, is expressed in brain branches but not in eye cells.

28 November 2018

1 reference

30 December 2023

https://opencitations.net/index/api/v1/citations/10.1016/S0925-4773(02)00341-6

Identifiers

DOI

10.1101/GR.113779.110

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21536722%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21536722%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

2 references