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HDV-like self-cleaving ribozymes
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scholarly article
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title
HDV-like self-cleaving ribozymes
(English)
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main subject
cell biology
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ribozyme
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author name string
Chiu-Ho T Webb
series ordinal
1
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Andrej Lupták
series ordinal
2
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language of work or name
English
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publication date
2011
1 reference
stated in
PubMed
published in
RNA Biology
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volume
8
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issue
5
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page(s)
719-27
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cites work
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The human HDV-like CPEB3 ribozyme is intrinsically fast-reacting
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R2 retrotransposons encode a self-cleaving ribozyme for processing from an rRNA cotranscript
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Antigenomic delta ribozyme variants with mutations in the catalytic core obtained by the in vitro selection method.
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Unbiased in vitro selection reveals the unique character of the self-cleaving antigenomic HDV RNA sequence
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Characterization of self-cleaving RNA sequences on the genome and antigenome of human hepatitis delta virus
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Human hepatitis delta virus RNA subfragments contain an autocleavage activity
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Immunofluorescence detection of new antigen-antibody system (delta/anti-delta) associated to hepatitis B virus in liver and in serum of HBsAg carriers
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A 1.9 A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage
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A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene
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A role for upstream RNA structure in facilitating the catalytic fold of the genomic hepatitis delta virus ribozyme
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CPEB3 is associated with human episodic memory.
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The poly(A) site sequence in HDV RNA alters both extent and rate of self-cleavage of the antigenomic ribozyme
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Two previously undescribed members of the mouse CPEB family of genes and their inducible expression in the principal cell layers of the hippocampus
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Activity of HDV ribozymes to trans-cleave HCV RNA
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The folding pathway of the genomic hepatitis delta virus ribozyme is dominated by slow folding of the pseudoknots
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Rolling circle replication of hepatitis delta virus RNA is carried out by two different cellular RNA polymerases
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In vitro selection of functional nucleic acids
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A host-specific function is required for ligation of a wide variety of ribozyme-processed RNAs
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A nested double pseudoknot is required for self-cleavage activity of both the genomic and antigenomic hepatitis delta virus ribozymes
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Detailed analysis of stem I and its 5' and 3' neighbor regions in the trans-acting HDV ribozyme
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Analysis of the cleavage reaction of a trans-acting human hepatitis delta virus ribozyme
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Replication of hepatitis delta virus RNA: effect of mutations of the autocatalytic cleavage sites
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Cis- and trans-acting ribozymes from a human pathogen, hepatitis delta virus
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The rare transcripts of interrupted rRNA genes in Drosophila melanogaster are processed or degraded during synthesis
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27 September 2017
Antigenomic RNA of human hepatitis delta virus can undergo self-cleavage.
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27 September 2017
A pseudoknot-like structure required for efficient self-cleavage of hepatitis delta virus RNA.
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27 September 2017
Efficient trans cleavage and a common structural motif for the ribozymes of the human hepatitis delta agent
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27 September 2017
Conserved features at the 5 end of Drosophila R2 retrotransposable elements: implications for transcription and translation
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30 May 2018
A conserved bulged adenosine in a peripheral duplex of the antigenomic HDV self-cleaving RNA reduceskinetic trapping of inactive conformations
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30 May 2018
Selection in vitro of trans-acting genomic human hepatitis delta virus (HDV) ribozymes
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PubMed Central
reference URL
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30 May 2018
Structural and sequence elements required for the self-cleaving activity of the hepatitis delta virus ribozyme
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reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256349
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30 May 2018
The self-cleaving domain from the genomic RNA of hepatitis delta virus: sequence requirements and the effects of denaturant
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30 May 2018
Pattern searching/alignment with RNA primary and secondary structures: an effective descriptor for tRNA
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30 May 2018
Secondary structure of the self-cleaving RNA of hepatitis delta virus: applications to catalytic RNA design
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30 May 2018
Self-cleavage of hepatitis delta virus genomic strand RNA is enhanced under partially denaturing conditions
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21 January 2018
A conformational switch controls hepatitis delta virus ribozyme catalysis
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21 January 2018
Design of a highly reactive HDV ribozyme sequence uncovers facilitation of RNA folding by alternative pairings and physiological ionic strength
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Crossref
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21 January 2018
Direct pK(a) measurement of the active-site cytosine in a genomic hepatitis delta virus ribozyme
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Crossref
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21 January 2018
Addition of an extra substrate binding site and partial destabilization of stem structures in HDV ribozyme give rise to high sequence-specificity for its target RNA.
1 reference
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Crossref
reference URL
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21 January 2018
Constructing an efficient trans-acting genomic HDV ribozyme
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21734469
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.4161/RNA.8.5.16226
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
559198
OpenCitations bibliographic resource ID
559198
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
559198
PMC publication ID
3256349
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
559198
PubMed publication ID
21734469
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
559198
ResearchGate publication ID
51472416
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