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R-Coffee: a web server for accurately aligning noncoding RNA sequences
scientific article
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scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
2447777
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18483080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
title
R-Coffee: a web server for accurately aligning noncoding RNA sequences
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
2447777
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18483080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
main subject
sequence alignment
1 reference
based on heuristic
inferred from title
coffee
0 references
web server
1 reference
based on heuristic
inferred from title
author
Sébastien Moretti
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
2447777
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18483080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
Andreas Wilm
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
2447777
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18483080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
Desmond G. Higgins
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
2447777
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18483080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
Ioannis Xenarios
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMC publication ID
2447777
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18483080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
Cedric Notredame
series ordinal
5
1 reference
stated in
Europe PubMed Central
PMC publication ID
2447777
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18483080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
author name string
Desmond G Higgins
series ordinal
3
0 references
language of work or name
English
0 references
publication date
15 May 2008
1 reference
stated in
Europe PubMed Central
PMC publication ID
2447777
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18483080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
published in
Nucleic Acids Research
1 reference
stated in
Europe PubMed Central
PMC publication ID
2447777
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18483080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
volume
36
1 reference
stated in
Europe PubMed Central
PMC publication ID
2447777
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18483080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
issue
Web Server issue
1 reference
stated in
Europe PubMed Central
PMC publication ID
2447777
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18483080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
page(s)
W10-3
1 reference
stated in
Europe PubMed Central
PMC publication ID
2447777
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18483080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
cites work
R-Coffee: a method for multiple alignment of non-coding RNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
7 April 2017
Recent evolutions of multiple sequence alignment algorithms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
7 April 2017
Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
7 April 2017
Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
7 April 2017
An enhanced RNA alignment benchmark for sequence alignment programs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
7 April 2017
Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
7 April 2017
M-Coffee: combining multiple sequence alignment methods with T-Coffee
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
7 April 2017
A benchmark of multiple sequence alignment programs upon structural RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
7 April 2017
ProbCons: Probabilistic consistency-based multiple sequence alignment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
7 April 2017
MAFFT version 5: improvement in accuracy of multiple sequence alignment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
7 April 2017
MUSCLE: multiple sequence alignment with high accuracy and high throughput
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
7 April 2017
Mfold web server for nucleic acid folding and hybridization prediction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
7 April 2017
T-Coffee: A novel method for fast and accurate multiple sequence alignment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
7 April 2017
A general method applicable to the search for similarities in the amino acid sequence of two proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
7 April 2017
Vienna RNA secondary structure server
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
7 April 2017
Murlet: a practical multiple alignment tool for structural RNA sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
7 April 2017
Alignment of RNA base pairing probability matrices
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
7 April 2017
Secondary structure prediction for aligned RNA sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
7 April 2017
RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
27 September 2017
A practical guide to the art of RNA gene prediction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
27 September 2017
Multiple structural alignment and clustering of RNA sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
27 September 2017
Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
27 September 2017
STRAL: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
27 September 2017
RNA-based phylogenetic methods: application to mammalian mitochondrial RNA sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447777
retrieved
30 May 2018
Local RNA base pairing probabilities in large sequences.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1093%2FNAR%2FGKN278
retrieved
21 January 2018
Identifiers
DOI
10.1093/NAR/GKN278
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
697699
stated in
Europe PubMed Central
PMC publication ID
2447777
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18483080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
DBLP publication ID
journals/nar/MorettiWHXN08
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
OpenCitations bibliographic resource ID
697699
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
697699
PMC publication ID
2447777
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
697699
stated in
Europe PubMed Central
PMC publication ID
2447777
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18483080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
PubMed publication ID
18483080
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
697699
stated in
Europe PubMed Central
PMC publication ID
2447777
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18483080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
ResearchGate publication ID
5368758
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