(Q24646200)

1

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Andrey V Tataurov

2

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Yihe Wu

3

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Jeffrey A Manthey

4

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Kyle A McQuisten

5

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Hakeem G Almabrazi

6

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Kent F Pedersen

7

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Yuan Lin

8

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Justin Garretson

9

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Neil O McEntaggart

10

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Chris A Sailor

11

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Robert B Dawson

12

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Andrew S Peek

Design of LNA probes that improve mismatch discrimination

13

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language of work or name

English

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publication date

1 July 2008

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published in

Nucleic Acids Research

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volume

36

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issue

Web Server issue

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page(s)

W163-9

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

dnaMATE: a consensus melting temperature prediction server for short DNA sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Fast algorithm for predicting the secondary structure of single-stranded RNA

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Basic local alignment search tool

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Asymmetry in the assembly of the RNAi enzyme complex

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Primer3 on the WWW for general users and for biologist programmers

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Predicting ultraviolet spectrum of single stranded and double stranded deoxyribonucleic acids

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Predicting sequence-dependent melting stability of short duplex DNA oligomers

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

High density synthetic oligonucleotide arrays

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Real time quantitative PCR

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Identification of sequence motifs significantly associated with antisense activity

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Improving model predictions for RNA interference activities that use support vector machine regression by combining and filtering features

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Design of active small interfering RNAs

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Statistical thermodynamics and kinetics of DNA multiplex hybridization reactions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Revised UV extinction coefficients for nucleoside-5'-monophosphates and unpaired DNA and RNA.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Gene silencing mediated by small interfering RNAs in mammalian cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Expression of small interfering RNAs targeted against HIV-1 rev transcripts in human cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Identification of sequence motifs in oligonucleotides whose presence is correlated with antisense activity

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Thermodynamic parameters for DNA sequences with dangling ends

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Thermodynamic basis of the enhanced specificity of structured DNA probes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Primer design for large scale sequencing.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Thermodynamics of internal C.T mismatches in DNA.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Improved predictions of secondary structures for RNA

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

OligoCalc: an online oligonucleotide properties calculator.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Constitutive and conditional suppression of exogenous and endogenous genes by anti-sense RNA.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Synthetic dsRNA Dicer substrates enhance RNAi potency and efficacy.

30 May 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN198

Calculating nucleic acid secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN198

Effects of fluorescent dyes, quenchers, and dangling ends on DNA duplex stability.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN198

Melting temperatures of nucleic acids: discrepancies in analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN198

PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN198

Predicting stability of DNA duplexes in solutions containing magnesium and monovalent cations

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Sequence-dependent thermodynamic parameters for locked nucleic acid (LNA)-DNA duplex formation

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Effects of sodium ions on DNA duplex oligomers: improved predictions of melting temperatures.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Oligo Design: a computer program for development of probes for oligonucleotide microarrays.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447751

Oligonucleotide interactions. III. Circular dichroism studies of the conformation of deoxyoligonucleolides

28 November 2018

1 reference

12 December 2020

Prediction of RNA secondary structure by energy minimization

1 reference

12 December 2020

Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes

1 reference

12 December 2020

GCG: The Wisconsin Package of sequence analysis programs

1 reference

12 December 2020

MEDUSA: large scale automatic selection and visual assessment of PCR primer pairs

1 reference

12 December 2020

EMBOSS opens up sequence analysis. European Molecular Biology Open Software Suite

1 reference

12 December 2020

Thermodynamics and NMR of internal G.T mismatches in DNA

1 reference

12 December 2020

Nearest neighbor thermodynamic parameters for internal G.A mismatches in DNA

1 reference

12 December 2020

Nearest-neighbor thermodynamics of internal A.C mismatches in DNA: sequence dependence and pH effects

1 reference

12 December 2020

Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches

1 reference

12 December 2020

LNA (Locked Nucleic Acids): Synthesis of the adenine, cytosine, guanine, 5-methylcytosine, thymine and uracil bicyclonucleoside monomers, oligomerisation, and unprecedented nucleic acid recognition

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN198

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1093/NAR/GKN198

1 reference

journals/nar/OwczarzyTWMMAPLGMSDP08

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 reference

PubMed publication ID

18440976

1 reference