Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q24657210)
Watch
English
Consensus scoring for enriching near-native structures from protein-protein docking decoys
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
2656599
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18831053%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
title
Consensus scoring for enriching near-native structures from protein-protein docking decoys
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
2656599
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18831053%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
main subject
protein structure
0 references
author
Yaoqi Zhou
series ordinal
5
1 reference
stated in
Europe PubMed Central
PMC publication ID
2656599
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18831053%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
author name string
Shide Liang
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
2656599
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18831053%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
Samy O Meroueh
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
2656599
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18831053%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
Guangce Wang
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
2656599
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18831053%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
Chao Qiu
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMC publication ID
2656599
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18831053%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
language of work or name
English
0 references
publication date
1 May 2009
1 reference
stated in
Europe PubMed Central
PMC publication ID
2656599
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18831053%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
published in
Proteins
1 reference
stated in
Europe PubMed Central
PMC publication ID
2656599
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18831053%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
volume
75
1 reference
stated in
Europe PubMed Central
PMC publication ID
2656599
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18831053%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
issue
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
2656599
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18831053%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
page(s)
397-403
1 reference
stated in
Europe PubMed Central
PMC publication ID
2656599
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18831053%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
cites work
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
7 April 2017
Amino acid substitution matrices from protein blocks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
7 April 2017
The atomic structure of protein-protein recognition sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
7 April 2017
Docking and scoring protein complexes: CAPRI 3rd Edition
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
7 April 2017
Protein-Protein Docking Benchmark 2.0: an update
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
7 April 2017
Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
7 April 2017
Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
7 April 2017
Interaction-site prediction for protein complexes: a critical assessment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
28 September 2017
Protein binding site prediction using an empirical scoring function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
28 September 2017
High-resolution protein-protein docking
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
28 September 2017
WHISCY: what information does surface conservation yield? Application to data-driven docking.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
28 September 2017
Prediction of the interaction site on the surface of an isolated protein structure by analysis of side chain energy scores.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
28 September 2017
Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
28 September 2017
Integrating statistical pair potentials into protein complex prediction.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
30 May 2018
Physicochemical and residue conservation calculations to improve the ranking of protein-protein docking solutions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
30 May 2018
A simple reference state makes a significant improvement in near-native selections from structurally refined docking decoys
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
28 November 2018
ZRANK: reranking protein docking predictions with an optimized energy function.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
28 November 2018
Efficient restraints for protein-protein docking by comparison of observed amino acid substitution patterns with those predicted from local environment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
28 November 2018
Refinement of unbound protein docking studies using biological knowledge
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
28 November 2018
Scoring docking models with evolutionary information.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
28 November 2018
Docking prediction using biological information, ZDOCK sampling technique, and clustering guided by the DFIRE statistical energy function.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
28 November 2018
ProMate: a structure based prediction program to identify the location of protein-protein binding sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
28 November 2018
A novel method for scoring of docked protein complexes using predicted protein-protein binding sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
28 November 2018
ClusPro: an automated docking and discrimination method for the prediction of protein complexes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
28 November 2018
ZDOCK: an initial-stage protein-docking algorithm.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
28 November 2018
Prediction of protein interaction sites from sequence profile and residue neighbor list.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
28 November 2018
Prediction of protein-protein interaction sites using patch analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2656599
retrieved
28 November 2018
Identifiers
DOI
10.1002/PROT.22252
1 reference
stated in
Europe PubMed Central
PMC publication ID
2656599
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18831053%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
PMC publication ID
2656599
1 reference
stated in
Europe PubMed Central
PMC publication ID
2656599
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18831053%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
PubMed publication ID
18831053
1 reference
stated in
Europe PubMed Central
PMC publication ID
2656599
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18831053%20AND%20SRC:MED&resulttype=core&format=json
retrieved
15 January 2020
ResearchGate publication ID
23295680
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
