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Autophagy: molecular machinery for self-eating
scientific article
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instance of
scholarly article
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review article
1 reference
stated in
Europe PubMed Central
title
Autophagy: molecular machinery for self-eating
(English)
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main subject
cell biology
0 references
autophagy
0 references
author name string
T Yorimitsu
series ordinal
1
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D J Klionsky
series ordinal
2
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language of work or name
English
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publication date
November 2005
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published in
Cell Death & Differentiation
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volume
12 Suppl 2
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page(s)
1542-52
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cites work
Endothelial nitric-oxide synthase antisense (NOS3AS) gene encodes an autophagy-related protein (APG9-like2) highly expressed in trophoblast
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Atg17 functions in cooperation with Atg1 and Atg13 in yeast autophagy
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LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation
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PubMed Central
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7 April 2017
In vivo analysis of autophagy in response to nutrient starvation using transgenic mice expressing a fluorescent autophagosome marker
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7 April 2017
Autophagy in the eukaryotic cell
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PubMed Central
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7 April 2017
Cooperative binding of the cytoplasm to vacuole targeting pathway proteins, Cvt13 and Cvt20, to phosphatidylinositol 3-phosphate at the pre-autophagosomal structure is required for selective autophagy
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PubMed Central
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7 April 2017
The pre-autophagosomal structure organized by concerted functions of APG genes is essential for autophagosome formation
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PubMed Central
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7 April 2017
Cvt9/Gsa9 functions in sequestering selective cytosolic cargo destined for the vacuole
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PubMed Central
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7 April 2017
Dissection of autophagosome formation using Apg5-deficient mouse embryonic stem cells
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7 April 2017
LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing
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PubMed Central
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7 April 2017
The reversible modification regulates the membrane-binding state of Apg8/Aut7 essential for autophagy and the cytoplasm to vacuole targeting pathway
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PubMed Central
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Tor-mediated induction of autophagy via an Apg1 protein kinase complex
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7 April 2017
Formation process of autophagosome is traced with Apg8/Aut7p in yeast
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7 April 2017
Atg9 cycles between mitochondria and the pre-autophagosomal structure in yeasts
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PubMed Central
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7 April 2017
Atg17 regulates the magnitude of the autophagic response
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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7 April 2017
Atg11 links cargo to the vesicle-forming machinery in the cytoplasm to vacuole targeting pathway
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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7 April 2017
In vivo and in vitro reconstitution of Atg8 conjugation essential for autophagy
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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7 April 2017
Atg21 is a phosphoinositide binding protein required for efficient lipidation and localization of Atg8 during uptake of aminopeptidase I by selective autophagy
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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7 April 2017
Cargo proteins facilitate the formation of transport vesicles in the cytoplasm to vacuole targeting pathway
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PubMed Central
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7 April 2017
Yeast homotypic vacuole fusion requires the Ccz1-Mon1 complex during the tethering/docking stage
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PubMed Central
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7 April 2017
Atg23 is essential for the cytoplasm to vacuole targeting pathway and efficient autophagy but not pexophagy
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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7 April 2017
Chemical genetic analysis of Apg1 reveals a non-kinase role in the induction of autophagy
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PubMed Central
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7 April 2017
Retromer and the sorting nexins Snx4/41/42 mediate distinct retrieval pathways from yeast endosomes
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PubMed Central
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7 April 2017
Intravacuolar membrane lysis in Saccharomyces cerevisiae. Does vacuolar targeting of Cvt17/Aut5p affect its function?
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7 April 2017
Mechanism of cargo selection in the cytoplasm to vacuole targeting pathway
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PubMed Central
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7 April 2017
Studies of cargo delivery to the vacuole mediated by autophagosomes in Saccharomyces cerevisiae
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PubMed Central
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7 April 2017
The Ccz1-Mon1 protein complex is required for the late step of multiple vacuole delivery pathways
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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7 April 2017
Novel PtdIns(3)P-binding protein Etf1 functions as an effector of the Vps34 PtdIns 3-kinase in autophagy
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7 April 2017
Formation of the approximately 350-kDa Apg12-Apg5.Apg16 multimeric complex, mediated by Apg16 oligomerization, is essential for autophagy in yeast
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PubMed Central
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7 April 2017
Cvt18/Gsa12 is required for cytoplasm-to-vacuole transport, pexophagy, and autophagy in Saccharomyces cerevisiae and Pichia pastoris
1 reference
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PubMed Central
reference URL
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7 April 2017
Autophagosome requires specific early Sec proteins for its formation and NSF/SNARE for vacuolar fusion
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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7 April 2017
Aut5/Cvt17p, a putative lipase essential for disintegration of autophagic bodies inside the vacuole
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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7 April 2017
Cvt19 is a receptor for the cytoplasm-to-vacuole targeting pathway.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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7 April 2017
Apg2p functions in autophagosome formation on the perivacuolar structure
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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7 April 2017
Apg2 is a novel protein required for the cytoplasm to vacuole targeting, autophagy, and pexophagy pathways
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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7 April 2017
Two distinct Vps34 phosphatidylinositol 3-kinase complexes function in autophagy and carboxypeptidase Y sorting in Saccharomyces cerevisiae
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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7 April 2017
A ubiquitin-like system mediates protein lipidation
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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7 April 2017
Degradation of lipid vesicles in the yeast vacuole requires function of Cvt17, a putative lipase
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PubMed Central
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7 April 2017
Apg13p and Vac8p are part of a complex of phosphoproteins that are required for cytoplasm to vacuole targeting
1 reference
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PubMed Central
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7 April 2017
Apg9p/Cvt7p is an integral membrane protein required for transport vesicle formation in the Cvt and autophagy pathways
1 reference
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PubMed Central
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7 April 2017
Apg10p, a novel protein-conjugating enzyme essential for autophagy in yeast.
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PubMed Central
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7 April 2017
Apg16p is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway
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PubMed Central
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7 April 2017
Apg7p/Cvt2p is required for the cytoplasm-to-vacuole targeting, macroautophagy, and peroxisome degradation pathways
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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7 April 2017
A protein conjugation system essential for autophagy
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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7 April 2017
Aut2p and Aut7p, two novel microtubule-associated proteins are essential for delivery of autophagic vesicles to the vacuole
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7 April 2017
Tor, a phosphatidylinositol kinase homologue, controls autophagy in yeast
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PubMed Central
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7 April 2017
Apg1p, a novel protein kinase required for the autophagic process in Saccharomyces cerevisiae
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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7 April 2017
Analyses of APG13 gene involved in autophagy in yeast, Saccharomyces cerevisiae
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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7 April 2017
Cytoplasm-to-vacuole targeting and autophagy employ the same machinery to deliver proteins to the yeast vacuole
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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7 April 2017
Isolation and characterization of autophagy-defective mutants of Saccharomyces cerevisiae
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7 April 2017
Aminopeptidase I of Saccharomyces cerevisiae is localized to the vacuole independent of the secretory pathway
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PubMed Central
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7 April 2017
Mechanisms of chaperone-mediated autophagy
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7 April 2017
Mouse Apg16L, a novel WD-repeat protein, targets to the autophagic isolation membrane with the Apg12-Apg5 conjugate
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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7 April 2017
Molecular dissection of autophagy: two ubiquitin-like systems
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PubMed Central
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7 April 2017
The role of autophagy during the early neonatal starvation period
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7 April 2017
Development by self-digestion: molecular mechanisms and biological functions of autophagy
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7 April 2017
Autophagy as a regulated pathway of cellular degradation
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7 April 2017
Autophagy in health and disease: a double-edged sword
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7 April 2017
The Atg1-Atg13 complex regulates Atg9 and Atg23 retrieval transport from the pre-autophagosomal structure
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PubMed Central
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7 April 2017
A Unified Nomenclature for Yeast Autophagy-Related Genes
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7 April 2017
Two distinct pathways for targeting proteins from the cytoplasm to the vacuole/lysosome
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7 April 2017
Isolation of autophagocytosis mutants of Saccharomyces cerevisiae
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7 April 2017
Isolation and characterization of yeast mutants in the cytoplasm to vacuole protein targeting pathway
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7 April 2017
Autophagy in yeast demonstrated with proteinase-deficient mutants and conditions for its induction
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7 April 2017
Role for Rab7 in maturation of late autophagic vacuoles
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9 May 2017
Eating oneself and uninvited guests: autophagy-related pathways in cellular defense
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28 September 2017
The molecular machinery of autophagy: unanswered questions
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28 September 2017
Multiple cell death programs: Charon's lifts to Hades
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28 September 2017
Pathophysiology of chaperone-mediated autophagy
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28 September 2017
Autophagy: in sickness and in health
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28 September 2017
Cellular autophagy: surrender, avoidance and subversion by microorganisms
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28 September 2017
Early stages of the secretory pathway, but not endosomes, are required for Cvt vesicle and autophagosome assembly in Saccharomyces cerevisiae
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PubMed Central
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28 September 2017
The molecular mechanism of autophagy
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28 September 2017
Yeast autophagosomes: de novo formation of a membrane structure
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28 September 2017
Convergence of multiple autophagy and cytoplasm to vacuole targeting components to a perivacuolar membrane compartment prior to de novo vesicle formation
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28 September 2017
Vacuolar localization of oligomeric alpha-mannosidase requires the cytoplasm to vacuole targeting and autophagy pathway components in Saccharomyces cerevisiae
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28 September 2017
Aminopeptidase I is targeted to the vacuole by a nonclassical vesicular mechanism
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28 September 2017
Genetic and phenotypic overlap between autophagy and the cytoplasm to vacuole protein targeting pathway
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
retrieved
28 September 2017
Identification of a cytoplasm to vacuole targeting determinant in aminopeptidase I
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
retrieved
28 September 2017
Peroxisome degradation in Saccharomyces cerevisiae is dependent on machinery of macroautophagy and the Cvt pathway.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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30 May 2018
Glucose-induced microautophagy in Pichia pastoris requires the alpha-subunit of phosphofructokinase.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
retrieved
30 May 2018
Rab7 is required for the normal progression of the autophagic pathway in mammalian cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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28 November 2018
Ald6p is a preferred target for autophagy in yeast, Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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28 November 2018
The early secretory pathway contributes to autophagy in yeast.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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28 November 2018
Degradation and turnover of peroxisomes in the yeast Hansenula polymorpha induced by selective inactivation of peroxisomal enzymes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1828868
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28 November 2018
Selective autophagy of peroxisomes in methylotrophic yeasts
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/16247502
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Acidification of vacuoles is required for autophagic degradation in the yeast, Saccharomyces cerevisiae
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/16247502
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Selective peroxisome degradation in Yarrowia lipolytica after a shift of cells from acetate/oleate/ethylamine into glucose/ammonium sulfate-containing media
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/16247502
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1038/SJ.CDD.4401765
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
868487
Dimensions Publication ID
1022529588
0 references
OpenCitations bibliographic resource ID
868487
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
868487
PMC publication ID
1828868
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
868487
PubMed publication ID
16247502
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
868487
ResearchGate publication ID
7518158
0 references
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