(Q24700982)

19 June 2016

title

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles (English)

1 reference

PubMed

PubMed publication ID

19 June 2016

0 references

0 references

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Anthony Mathelier

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Oriol Fornés

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Chih-Yu Chen

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Ge Tan

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Francois Parcy

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Boris Lenhard

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Wyeth Wasserman

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

author name string

David J Arenillas

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Grégoire Denay

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Wenqiang Shi

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Casper Shyr

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Rebecca Worsley-Hunt

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Allen W Zhang

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Jessica Lee

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

language of work or name

English

0 references

publication date

4 January 2016

0 references

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

volume

44

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

issue

D1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

page(s)

D110-5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 4.0 International

6 June 2020

copyright license

start time

15 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

BioRuby: bioinformatics software for the Ruby programming language

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702842

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

7 April 2017

1 reference

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A new generation of JASPAR, the open-access repository for transcription factor binding site profiles

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702842

Bioconductor: open software development for computational biology and bioinformatics

7 April 2017

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Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702842

Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors

7 April 2017

1 reference

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DNA-binding specificities of human transcription factors

7 April 2017

1 reference

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TFCat: the curated catalog of mouse and human transcription factors

7 April 2017

1 reference

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JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

7 April 2017

1 reference

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Diversity and complexity in DNA recognition by transcription factors

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702842

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702842

Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702842

TFClass: a classification of human transcription factors and their rodent orthologs

9 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702842

A functional and evolutionary perspective on transcription factor binding in Arabidopsis thaliana.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702842

Determination and inference of eukaryotic transcription factor sequence specificity

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702842

DNA-binding specificities of plant transcription factors and their potential to define target genes

28 September 2017

1 reference

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JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702842

The next generation of transcription factor binding site prediction

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702842

Evaluation of methods for modeling transcription factor sequence specificity

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702842

Inferring direct DNA binding from ChIP-seq

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702842

Improved models for transcription factor binding site identification using nonindependent interactions

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702842

Prediction of regulatory interactions from genome sequences using a biophysical model for the Arabidopsis LEAFY transcription factor

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702842

Dinucleotide weight matrices for predicting transcription factor binding sites: generalizing the position weight matrix

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702842

Non-independence of Mnt repressor-operator interaction determined by a new quantitative multiple fluorescence relative affinity (QuMFRA) assay.

28 September 2017

1 reference

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Modeling the specificity of protein-DNA interactions

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702842

bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702842

Position dependencies in transcription factor binding sites.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702842

Modeling within-motif dependence for transcription factor binding site predictions

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702842

28 November 2018

Identifiers

DOI

10.1093/NAR/GKV1176

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/MathelierFACDLS16

6 June 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

PubMed publication ID

26531826

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26531826%20AND%20SRC:MED&resulttype=core&format=json