(Q24792585)

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Homopolymer tract length dependent enrichments in functional regions of 27 eukaryotes and their novel dependence on the organism DNA (G+C)% composition

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scholarly article

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Homopolymer tract length dependent enrichments in functional regions of 27 eukaryotes and their novel dependence on the organism DNA (G+C)% composition (English)

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author name string

Yue Zhou

1

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Jeffrey W Bizzaro

2

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Kenneth A Marx

3

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language of work or name

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publication date

14 December 2004

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5

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1

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95

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copyright license

Creative Commons Attribution 2.0 Generic

1 December 2004

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April 2022 Public Data File from Crossref

copyright status

1 reference

April 2022 Public Data File from Crossref

Poly: a quantitative analysis tool for simple sequence repeat (SSR) tracts in DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

7 April 2017

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

7 April 2017

The crystal structure of d(G-G-G-G-C-C-C-C). A model for poly(dG).poly(dC)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

7 April 2017

The structure of an oligo(dA).oligo(dT) tract and its biological implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

7 April 2017

A DNA binding protein that recognizes oligo(dA).oligo(dT) tracts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

7 April 2017

Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

7 April 2017

Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

7 April 2017

Poly(dA.dT) sequences exist as rigid DNA structures in nucleosome-free yeast promoters in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

A DNA polymerase epsilon mutant that specifically causes +1 frameshift mutations within homonucleotide runs in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

Microsatellites in different eukaryotic genomes: survey and analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

Destabilization of nucleosomes by an unusual DNA conformation adopted by poly(dA) small middle dotpoly(dT) tracts in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

A Dictyostelium protein binds to distinct oligo(dA) x oligo(dT) DNA sequences in the C-module of the retrotransposable element DRE.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

Distinct frequency-distributions of homopolymeric DNA tracts in different genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

Hypermutability of homonucleotide runs in mismatch repair and DNA polymerase proofreading yeast mutants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

Identification and characterization of multiple A/T-rich cis-acting elements that control expression from Dictyostelium actin promoters: the Dictyostelium actin upstream activating sequence confers growth phase expression and has enhancer-like prope

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

Nucleosomes will not form on double-stranded RNa or over poly(dA).poly(dT) tracts in recombinant DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

Two nuclear DNA binding proteins ofDictyostelium discoideumwith a high affinity for poly(dA)-poly(dT)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

The locus of sequence-directed and protein-induced DNA bending

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

Frameshift mutations and the genetic code. This paper is dedicated to Professor Theodosius Dobzhansky on the occasion of his 66th birthday

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

DNA bending at adenine . thymine tracts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

Naturally occurring poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

The structure of poly(dA):poly(dT) in a condensed state and in solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

Direct evidence for DNA bending at the lambda replication origin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

The propeller DNA conformation of poly(dA).poly(dT).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

DNA conformation and protein binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

A poly(dA.dT) tract is a component of the recombination initiation site at the ARG4 locus in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

A poly(dA-dT) upstream activating sequence binds high-mobility group I protein and contributes to lymphotoxin (tumor necrosis factor-beta) gene regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

Corruption of genomic databases with anomalous sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

Straightening out the bends in curved DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

Nucleosome cores reconstituted from poly (dA-dT) and the octamer of histones

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

Chromatin and core particles formed from the inner histones and synthetic polydeoxyribonucleotides of defined sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 September 2017

Functional analysis of a homopolymeric (dA-dT) element that provides nucleosomal access to yeast and mammalian transcription factors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

30 May 2018

A naturally occurring T14A11 tract blocks nucleosome formation over the human neurofibromatosis type 1 (NF1)-Alu element.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

30 May 2018

Poly(dA).poly(dT) is a B-type double helix with a distinctively narrow minor groove

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

30 May 2018

Sequence periodicities in chicken nucleosome core DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

30 May 2018

Telomeric DNA dimerizes by formation of guanine tetrads between hairpin loops

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

30 May 2018

Transcription initiation and nuclease-sensitive sites upstream of the epsilon-globin gene in K562 cells are related to poly (dA).poly (dT) sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

30 May 2018

Poly[d(A · T)]and other synthetic polydeoxynucleotides containing oligoadenosine tracts form nucleosomes easily

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

30 May 2018

Mutagenesis by transient misalignment.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

19 June 2018

Bias of purine stretches in sequenced chromosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 November 2018

Differential distribution of simple sequence repeats in eukaryotic genome sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 November 2018

Statistical mechanical simulation of polymeric DNA melting with MELTSIM.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 November 2018

Oxidative DNA damage through long-range electron transfer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 November 2018

CLEANUP: a fast computer program for removing redundancies from nucleotide sequence databases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 November 2018

Poly(dC) segments and cloning artifacts in databases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 November 2018

Conformational change in the DNA associated with an unusual promoter mutation in a tRNA operon of Salmonella.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539357

28 November 2018

Molecular markers: tools to improve genebank efficiency

1 reference

https://pubmed.ncbi.nlm.nih.gov/15598342

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Left-handed DNA helices

1 reference

https://pubmed.ncbi.nlm.nih.gov/15598342

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A bent helix in kinetoplast DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/15598342

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bent DNA at a yeast autonomously replicating sequence

1 reference

https://pubmed.ncbi.nlm.nih.gov/15598342

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Competitive nucleosome reconstitution of polydeoxynucleotides containing oligoguanosine tracts

1 reference

https://pubmed.ncbi.nlm.nih.gov/15598342

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characteristics of the large (dA).(dT) homopolymer tracts in D. discoideum gene flanking and intron sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/15598342

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alignment of (dA).(dT) homopolymer tracts in gene flanking sequences suggests nucleosomal periodicity in D. discoideum DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/15598342

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Exonucleolytic proofreading during replication of repetitive DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/15598342

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Potential Gene Conversion and Source Genes for Recently Integrated Alu Elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/15598342

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification and characterization of genomic nucleosome-positioning sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/15598342

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GCN5, a yeast transcriptional coactivator, induces chromatin reconfiguration of HIS3 promoter in vivo

1 reference

https://pubmed.ncbi.nlm.nih.gov/15598342

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA replication errors produced by the replicative apparatus of Escherichia coli.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15598342

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-5-95

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9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-5-95

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