(Q24810297)

3 July 2017

title

A universally applicable method of operon map prediction on minimally annotated genomes using conserved genomic context (English)

1 reference

3 July 2017

Martin T Edwards

1

1 reference

3 July 2017

Stuart C G Rison

series ordinal

2

1 reference

3 July 2017

Neil G Stoker

series ordinal

3

1 reference

3 July 2017

Lorenz Wernisch

series ordinal

4

1 reference

3 July 2017

language of work or name

English

0 references

publication date

7 June 2005

1 reference

3 July 2017

published in

Nucleic Acids Research

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3 July 2017

volume

33

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3 July 2017

issue

10

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3 July 2017

page(s)

3253-3262

1 reference

describes a project that uses

3 July 2017

Bayes' theorem

1 reference

18 June 2022

https://europepmc.org/article/PMC/1143694

inferred from PubMed Central ID database lookup

cites work

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

Genomic functional annotation using co-evolution profiles of gene clusters

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

Operons in Escherichia coli: genomic analyses and predictions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

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7 April 2017

1 reference

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The use of gene clusters to infer functional coupling

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 April 2017

1 reference

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A genomic perspective on protein families

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

Transcriptional organization of the Clostridium acetobutylicum genome.

7 April 2017

1 reference

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Molecular and functional analysis of the lepB gene, encoding a type I signal peptidase from Rickettsia rickettsii and Rickettsia typhi

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

Predicting bacterial transcription units using sequence and expression data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

Biosynthesis of the 7-deazaguanosine hypermodified nucleosides of transfer RNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

Transcriptional organization of the Pseudomonas putida tol-oprL genes.

28 September 2017

1 reference

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Mutational analysis of the TolA C-terminal domain of Escherichia coli and genetic evidence for an interaction between TolA and TolB.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

Antibacterial activities and characterization of novel inhibitors of LpxC.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

Connected gene neighborhoods in prokaryotic genomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

CheW binding interactions with CheA and Tar. Importance for chemotaxis signaling in Escherichia coli

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

Prediction of operons in microbial genomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

Gene context conservation of a higher order than operons.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

Transcriptional analysis of essential genes of the Escherichia coli fatty acid biosynthesis gene cluster by functional replacement with the analogous Salmonella typhimurium gene cluster

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

Lon-dependent regulation of the DNA binding protein HU in Escherichia coli

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

Purine regulon of gamma-proteobacteria: a detailed description

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

Nitrogen regulation of transport operons: analysis of promoters argTr and dhuA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

A powerful non-homology method for the prediction of operons in prokaryotes

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

Fastidian gum: the Xylella fastidiosa exopolysaccharide possibly involved in bacterial pathogenicity

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

The flgK motility operon of Borrelia burgdorferi is initiated by a sigma 70-like promoter

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143694

Identification of phospholipids as new components that assist in the in vitro trimerization of a bacterial pore protein

28 November 2018

1 reference

12 December 2020

Gene order is not conserved in bacterial evolution

1 reference

12 December 2020

Variation in HU composition during growth of Escherichia coli: the heterodimer is required for long term survival

1 reference

12 December 2020

Modulations in lipid A and phospholipid biosynthesis pathways influence outer membrane protein assembly in Escherichia coli K-12

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKI634

1 reference

3 July 2017

0 references

1 reference