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A comparison of RNA folding measures.
scientific article
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instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
1274297
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16202126%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
title
A comparison of RNA folding measures
(English)
1 reference
stated in
Europe PubMed Central
PMCID
1274297
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16202126%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
author
Paul P. Gardner
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
1274297
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16202126%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
author name string
Eva Freyhult
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
1274297
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16202126%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
Vincent Moulton
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
1274297
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16202126%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
language of work or name
English
0 references
publication date
3 October 2005
1 reference
stated in
Europe PubMed Central
PMCID
1274297
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16202126%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
published in
BMC Bioinformatics
1 reference
stated in
Europe PubMed Central
PMCID
1274297
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16202126%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
volume
6
1 reference
stated in
Europe PubMed Central
PMCID
1274297
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16202126%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
page(s)
241
1 reference
stated in
Europe PubMed Central
PMCID
1274297
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16202126%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
issue
1
0 references
exact match
https://scigraph.springernature.com/pub.10.1186/1471-2105-6-241
0 references
cites work
Fast and reliable prediction of noncoding RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274297
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7 April 2017
Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization
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stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274297
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7 April 2017
Rfam: an RNA family database
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274297
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7 April 2017
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274297
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7 April 2017
Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274297
retrieved
7 April 2017
The equilibrium partition function and base pair binding probabilities for RNA secondary structure
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274297
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7 April 2017
Mouse-centric comparative transcriptomics of protein coding and non-coding RNAs
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274297
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28 September 2017
Analysis of the conformational energy landscape of human snRNA with a metric based on tree representation of RNA structures
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28 September 2017
No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274297
retrieved
28 September 2017
mRNAs have greater negative folding free energies than shuffled or codon choice randomized sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274297
retrieved
28 September 2017
Thermodynamic stability and statistical significance of potential stem-loop structures situated at the frameshift sites of retroviruses
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274297
retrieved
28 September 2017
Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274297
retrieved
30 May 2018
Estimating the contributions of selection and self-organization in RNA secondary structure.
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reference URL
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30 May 2018
Complete suboptimal folding of RNA and the stability of secondary structures.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274297
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30 May 2018
Assessing the reliability of RNA folding using statistical mechanics
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274297
retrieved
30 May 2018
Significance of nucleotide sequence alignments: a method for random sequence permutation that preserves dinucleotide and codon usage.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274297
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30 May 2018
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274297
retrieved
28 November 2018
Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274297
retrieved
28 November 2018
Metrics on RNA secondary structures.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274297
retrieved
28 November 2018
A method for assessing the statistical significance of RNA folding.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274297
retrieved
28 November 2018
A program for predicting significant RNA secondary structures.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274297
retrieved
28 November 2018
A computational procedure for assessing the significance of RNA secondary structure
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1274297
retrieved
28 November 2018
Identifiers
DOI
10.1186/1471-2105-6-241
1 reference
stated in
Europe PubMed Central
PMCID
1274297
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16202126%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
DBLP publication ID
journals/bmcbi/FreyhultGM05
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
Dimensions Publication ID
1005448112
0 references
PMCID
1274297
1 reference
stated in
Europe PubMed Central
PMCID
1274297
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16202126%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
PubMed ID
16202126
1 reference
stated in
Europe PubMed Central
PMCID
1274297
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16202126%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 January 2020
ResearchGate publication ID
7563361
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