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MINER: software for phylogenetic motif identification
scientific article
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instance of
scholarly article
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title
MINER: software for phylogenetic motif identification
(English)
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main subject
phylogenetics
1 reference
based on heuristic
inferred from title
software
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author name string
David La
series ordinal
1
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Dennis R Livesay
series ordinal
2
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language of work or name
English
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publication date
1 July 2005
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published in
Nucleic Acids Research
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volume
33
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page(s)
W267-70
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issue
Web Server issue
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cites work
ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160226
retrieved
7 April 2017
The COG database: new developments in phylogenetic classification of proteins from complete genomes
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reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160226
retrieved
7 April 2017
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160226
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7 April 2017
WebLogo: A Sequence Logo Generator
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reference URL
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7 April 2017
An evolutionary trace method defines binding surfaces common to protein families
1 reference
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reference URL
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7 April 2017
The evolutionary origins and catalytic importance of conserved electrostatic networks within TIM-barrel proteins
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reference URL
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retrieved
28 September 2017
Searching for functional sites in protein structures.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160226
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28 September 2017
ConSurf: an algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information
1 reference
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PubMed Central
reference URL
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retrieved
28 September 2017
Predicting protein functional sites with phylogenetic motifs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160226
retrieved
30 May 2018
Using motif-based methods in multiple genome analyses: a case study comparing orthologous mesophilic and thermophilic proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160226
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28 November 2018
Automatic methods for predicting functionally important residues
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/15980467
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Motif-based construction of a functional map for mammalian olfactory receptors
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/15980467
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1093/NAR/GKI465
0 references
DBLP publication ID
journals/nar/LaL05
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
PMCID
1160226
0 references
PubMed ID
15980467
0 references
ResearchGate publication ID
7764274
0 references
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