(Q24814965)

English

A study on the correlation of nucleotide skews and the positioning of the origin of replication: different modes of replication in bacterial species

scientific article

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scholarly article

1 reference

Europe PubMed Central

5 July 2017

A study on the correlation of nucleotide skews and the positioning of the origin of replication: different modes of replication in bacterial species (English)

1 reference

Europe PubMed Central

5 July 2017

author name string

Christoforos Nikolaou

1

1 reference

Europe PubMed Central

5 July 2017

Yannis Almirantis

2

1 reference

Europe PubMed Central

5 July 2017

language of work or name

0 references

publication date

30 November 2005

1 reference

Europe PubMed Central

5 July 2017

number of pages

7

1 reference

based on heuristic

inferred from page(s)

Nucleic Acids Research

1 reference

Europe PubMed Central

5 July 2017

33

1 reference

Europe PubMed Central

5 July 2017

21

1 reference

Europe PubMed Central

5 July 2017

6816-6822

1 reference

Europe PubMed Central

5 July 2017

Asymmetric directional mutation pressures in bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

7 April 2017

Thermophilic bacteria strictly obey Szybalski's transcription direction rule and politely purine-load RNAs with both adenine and guanine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

7 April 2017

Replicational and transcriptional selection on codon usage in Borrelia burgdorferi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

7 April 2017

Asymmetric substitution patterns in the two DNA strands of bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

7 April 2017

Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 September 2017

Where does bacterial replication start? Rules for predicting the oriC region

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 September 2017

Three replication origins in Sulfolobus species: synchronous initiation of chromosome replication and asynchronous termination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 September 2017

Some recent studies on the composition and structure of nucleic acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 September 2017

Nucleotide Frequency Variation Across Human Genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 September 2017

Oriloc: prediction of replication boundaries in unannotated bacterial chromosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 September 2017

Strand asymmetry and codon usage bias in the chloroplast genome of Euglena gracilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 September 2017

Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 September 2017

Unequal fidelity of leading strand and lagging strand DNA replication on the Escherichia coli chromosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 September 2017

Correlation between transcription and C to T mutations in the non-transcribed DNA strand.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 September 2017

Pyrimidine clusters on the transcribing strand of DNA and their possible role in the initiation of RNA synthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 September 2017

When polymerases collide: replication and the transcriptional organization of the E. coli chromosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 September 2017

Consequences of replication fork movement through transcription units in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 September 2017

A sensitive genetic assay for the detection of cytosine deamination: determination of rate constants and the activation energy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 September 2017

Orientation of genes in the Bacillus subtilis chromosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 September 2017

Strand-specific compositional asymmetries in double-stranded DNA viruses.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

31 May 2018

Head-on collision between a DNA replication apparatus and RNA polymerase transcription complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

31 May 2018

Genometric analyses of the organization of circular chromosomes: a universal pressure determines the direction of ribosomal RNA genes transcription relative to chromosome replication.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 November 2018

Identification of two origins of replication in the single chromosome of the archaeon Sulfolobus solfataricus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 November 2018

Essentiality, not expressiveness, drives gene-strand bias in bacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 November 2018

Transcription-associated mutational asymmetry in mammalian evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 November 2018

Composition strand asymmetries in prokaryotic genomes: mutational bias and biased gene orientation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 November 2018

Accounting units in DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 November 2018

Skewed oligomers and origins of replication.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 November 2018

Intrastrand parity rules of DNA base composition and usage biases of synonymous codons.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301597

28 November 2018

Deamination as the basis of strand-asymmetric evolution in transcribed Escherichia coli sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/16321966

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Origin of replication of Mycoplasma genitalium

1 reference

https://pubmed.ncbi.nlm.nih.gov/16321966

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The contributions of replication orientation, gene direction, and signal sequences to base-composition asymmetries in bacterial genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16321966

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKI988

1 reference

Europe PubMed Central

5 July 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Europe PubMed Central

5 July 2017

1 reference

Europe PubMed Central

5 July 2017

ResearchGate publication ID

0 references

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