(Q24816299)

4 July 2017

title

Combining SELEX with quantitative assays to rapidly obtain accurate models of protein-DNA interactions (English)

1 reference

4 July 2017

Jiajian Liu

1

1 reference

4 July 2017

Gary D Stormo

series ordinal

2

1 reference

4 July 2017

language of work or name

English

0 references

publication date

25 September 2005

1 reference

4 July 2017

published in

Nucleic Acids Research

1 reference

4 July 2017

volume

33

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4 July 2017

issue

17

1 reference

4 July 2017

page(s)

e141

1 reference

Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein

4 July 2017

cites work

1 reference

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7 April 2017

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DNA-binding specificity of NGFI-A and related zinc finger transcription factors

7 April 2017

1 reference

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Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition

7 April 2017

1 reference

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Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

7 April 2017

1 reference

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Genome-wide location and function of DNA binding proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236725

DNA binding sites: representation and discovery

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236725

TRANSFAC: transcriptional regulation, from patterns to profiles

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236725

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236725

Differences and similarities in DNA-binding preferences of MyoD and E2A protein complexes revealed by binding site selection

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236725

Quantitative modeling of DNA-protein interactions: effects of amino acid substitutions on binding specificity of the Mnt repressor

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236725

Quantitative high-throughput analysis of transcription factor binding specificities.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236725

Specificity of Mnt 'master residue' obtained from in vivo and in vitro selections

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236725

Additivity in protein-DNA interactions: how good an approximation is it?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236725

Is there a code for protein-DNA recognition? Probab(ilistical)ly. . .

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236725

Non-independence of Mnt repressor-operator interaction determined by a new quantitative multiple fluorescence relative affinity (QuMFRA) assay.

28 September 2017

1 reference

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Exploring the DNA-binding specificities of zinc fingers with DNA microarrays

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236725

Quantitative specificity of the Mnt repressor

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236725

A zinc finger directory for high-affinity DNA recognition

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236725

Quantitative analysis of the relationship between nucleotide sequence and functional activity

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236725

Cyclic amplification and selection of targets (CASTing) for the myogenin consensus binding site

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236725

Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236725

High-throughput SELEX SAGE method for quantitative modeling of transcription-factor binding sites.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236725

Analysis of zinc fingers optimized via phage display: evaluating the utility of a recognition code

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1236725

One-hybrid systems for detecting protein-DNA interactions

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16186128

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Comparison of the DNA binding characteristics of the related zinc finger proteins WT1 and EGR1

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16186128

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GNI139

1 reference

4 July 2017

1 reference

4 July 2017

1 reference