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CRISPR interference: a structural perspective
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3727216
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3 March 2020
title
CRISPR interference: a structural perspective
(English)
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PubMed
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Europe PubMed Central
PMC publication ID
3727216
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3 March 2020
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CRISPR
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James Henderson Naismith
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2
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Europe PubMed Central
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3727216
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23805973%20AND%20SRC:MED&resulttype=core&format=json
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3 March 2020
Malcolm F. White
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3
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Europe PubMed Central
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3727216
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3 March 2020
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Judith Reeks
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3727216
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3 March 2020
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1 July 2013
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3 March 2020
published in
Biochemical Journal
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Europe PubMed Central
PMC publication ID
3727216
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3 March 2020
volume
453
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3727216
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3 March 2020
issue
2
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3727216
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3 March 2020
page(s)
155-166
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3727216
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3 March 2020
copyright license
Creative Commons Attribution 3.0 Unported
start time
25 July 2019
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Cas5d Protein Processes Pre-crRNA and Assembles into a Cascade-like Interference Complex in Subtype I-C/Dvulg CRISPR-Cas System
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Crystal Structure of the Largest Subunit of a Bacterial RNA-guided Immune Complex and Its Role in DNA Target Binding
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Crystal structure of Cmr2 suggests a nucleotide cyclase-related enzyme in type III CRISPR-Cas systems
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Crystal structure of a Cas6 paralogous protein from Pyrococcus furiosus
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Structure of the Cmr2 Subunit of the CRISPR-Cas RNA Silencing Complex
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Structural and biochemical characterization of HP0315 from Helicobacter pylori as a VapD protein with an endoribonuclease activity
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Structural and Biochemical Analysis of Nuclease Domain of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-associated Protein 3 (Cas3)
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Structural and Functional Characterization of an Archaeal Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-associated Complex for Antiviral Defense (CASCADE)
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Sequence- and Structure-Specific RNA Processing by a CRISPR Endonuclease
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X-ray crystal structure of a CRISPR-associated RAMP module [corrected] Cmr5 protein [corrected] from Thermus thermophilus HB8
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Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria
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RNA-guided genetic silencing systems in bacteria and archaea
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Evolution and classification of the CRISPR-Cas systems
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7 April 2017
CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
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CRISPR/Cas, the immune system of bacteria and archaea
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RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex
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CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
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7 April 2017
RNA recognition motifs: boring? Not quite
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7 April 2017
Phage response to CRISPR-encoded resistance in Streptococcus thermophilus
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7 April 2017
Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
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7 April 2017
The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression
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7 April 2017
Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
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7 April 2017
Identification of genes that are associated with DNA repeats in prokaryotes
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7 April 2017
Memory of viral infections by CRISPR-Cas adaptive immune systems: acquisition of new information
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28 September 2017
Cas5d processes pre-crRNA and is a member of a larger family of CRISPR RNA endonucleases
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28 September 2017
Cascade-mediated binding and bending of negatively supercoiled DNA.
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28 September 2017
Native tandem and ion mobility mass spectrometry highlight structural and modular similarities in clustered-regularly-interspaced shot-palindromic-repeats (CRISPR)-associated protein complexes from Escherichia coli and Pseudomonas aeruginosa
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28 September 2017
Tuning in to interference: R-loops and cascade complexes in CRISPR immunity.
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28 September 2017
Characterization of the CRISPR/Cas subtype I-A system of the hyperthermophilic crenarchaeon Thermoproteus tenax
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28 September 2017
Mechanism of substrate selection by a highly specific CRISPR endoribonuclease
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28 September 2017
The mysterious RAMP proteins and their roles in small RNA-based immunity
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28 September 2017
The impact of CRISPR repeat sequence on structures of a Cas6 protein-RNA complex
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28 September 2017
Mature clustered, regularly interspaced, short palindromic repeats RNA (crRNA) length is measured by a ruler mechanism anchored at the precursor processing site
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28 September 2017
Divergence and convergence in enzyme evolution
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28 September 2017
Structure and activity of the Cas3 HD nuclease MJ0384, an effector enzyme of the CRISPR interference
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28 September 2017
Structures of the RNA-guided surveillance complex from a bacterial immune system
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28 September 2017
Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems
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28 September 2017
Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence
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28 September 2017
RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions
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28 September 2017
Structural basis for CRISPR RNA-guided DNA recognition by Cascade
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727216
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28 September 2017
Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727216
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28 September 2017
CRISPR/Cas system and its role in phage-bacteria interactions
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727216
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28 September 2017
Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727216
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28 September 2017
Self versus non-self discrimination during CRISPR RNA-directed immunity.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727216
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28 September 2017
CRISPR-based adaptive and heritable immunity in prokaryotes
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727216
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28 September 2017
Short motif sequences determine the targets of the prokaryotic CRISPR defence system
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727216
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28 September 2017
CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727216
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28 September 2017
RNA-splicing endonuclease structure and function
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727216
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28 September 2017
Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain
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stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727216
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28 September 2017
CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727216
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28 September 2017
Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727216
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28 September 2017
The class III adenylyl cyclases: multi-purpose signalling modules
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727216
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28 September 2017
The origins of RNA catalysis in ribozymes
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727216
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28 September 2017
A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727216
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28 September 2017
In vitro reconstitution of Cascade-mediated CRISPR immunity in Streptococcus thermophilus.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727216
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31 May 2018
Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727216
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31 May 2018
CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3727216
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31 May 2018
Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and mitochondria.
1 reference
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21 January 2018
Helicase dissociation and annealing of RNA-DNA hybrids by Escherichia coli Cas3 protein.
1 reference
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21 January 2018
Identifiers
DOI
10.1042/BJ20130316
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1425787
stated in
Europe PubMed Central
PMC publication ID
3727216
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23805973%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 March 2020
OpenCitations bibliographic resource ID
1425787
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1425787
PMC publication ID
3727216
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1425787
stated in
Europe PubMed Central
PMC publication ID
3727216
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23805973%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 March 2020
PubMed publication ID
23805973
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1425787
stated in
Europe PubMed Central
PMC publication ID
3727216
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23805973%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 March 2020
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