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NMR insights into protein allostery
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title
NMR insights into protein allostery
(English)
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PubMed
author name string
Gregory Manley
series ordinal
1
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Crossref
J. Patrick Loria
series ordinal
2
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stated in
Crossref
language of work or name
English
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stated in
PubMed
publication date
15 March 2012
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stated in
PubMed
published in
Archives of Biochemistry and Biophysics
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stated in
PubMed
volume
519
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stated in
PubMed
page(s)
223-31
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PubMed
issue
2
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PubMed
cites work
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Structural evidence for ammonia tunneling across the (beta alpha)(8) barrel of the imidazole glycerol phosphate synthase bienzyme complex
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Crystal structure of imidazole glycerol phosphate synthase: a tunnel through a (beta/alpha)8 barrel joins two active sites
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Modeling the cAMP-induced allosteric transition using the crystal structure of CAP-cAMP at 2.1 A resolution
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ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL
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A conserved C-terminal domain in PBX increases DNA binding by the PBX homeodomain and is not a primary site of contact for the YPWM motif of HOXA1
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Allosteric signal transmission in the nucleotide-binding domain of 70-kDa heat shock protein (Hsp70) molecular chaperones
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Dynamically committed, uncommitted, and quenched states encoded in protein kinase A revealed by NMR spectroscopy
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28 September 2017
Mapping allostery through the covariance analysis of NMR chemical shifts
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28 September 2017
Competing allosteric mechanisms modulate substrate binding in a dimeric enzyme
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Characterization of enzyme motions by solution NMR relaxation dispersion.
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28 September 2017
A solution NMR study showing that active site ligands and nucleotides directly perturb the allosteric equilibrium in aspartate transcarbamoylase
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28 September 2017
Hsp70 chaperone ligands control domain association via an allosteric mechanism mediated by the interdomain linker
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Multiple-site exchange in proteins studied with a suite of six NMR relaxation dispersion experiments: an application to the folding of a Fyn SH3 domain mutant
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28 September 2017
Allosteric proteins and cellular control systems
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28 September 2017
Organization of signaling complexes by PDZ-domain scaffold proteins
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28 September 2017
FAST-Modelfree: a program for rapid automated analysis of solution NMR spin-relaxation data
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28 September 2017
Protein dynamics from solution NMR: theory and applications
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28 September 2017
Dynamics of cAMP-dependent protein kinase
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28 September 2017
Nuclear magnetic resonance methods for quantifying microsecond-to-millisecond motions in biological macromolecules
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28 September 2017
Binding sites in Escherichia coli dihydrofolate reductase communicate by modulating the conformational ensemble
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28 September 2017
Temperature effects on the allosteric responses of native and chimeric aspartate transcarbamoylases
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28 September 2017
Overexpression and characterization of the chromosomal aminoglycoside 6'-N-acetyltransferase from Enterococcus faecium
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28 September 2017
Insights into the local residual entropy of proteins provided by NMR relaxation
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28 September 2017
Contributions to conformational entropy arising from bond vector fluctuations measured from NMR-derived order parameters: application to protein folding
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28 September 2017
Spectral density function mapping using 15N relaxation data exclusively
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28 September 2017
Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution
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28 September 2017
Allosteric regulation of aspartate transcarbamoylase. Analysis of the structural and functional behavior in terms of a two-state model
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28 September 2017
Nanometer propagation of millisecond motions in V-type allostery
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28 September 2017
Imidazole glycerol phosphate synthase: the glutamine amidotransferase in histidine biosynthesis
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31 May 2018
Analysis of the ligand-promoted global conformational change in aspartate transcarbamoylase. Evidence for a two-state transition from boundary spreading in sedimentation velocity experiments
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31 May 2018
Cooperative binding of the bisubstrate analog N-(phosphonacetyl)-L-aspartate to aspartate transcarbamoylase and the heterotropic effects of ATP and CTP.
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31 May 2018
Applicability of magnetization transfer nuclear magnetic resonance to study chemical exchange reactions.
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31 May 2018
Direct measurements of the dissociation-rate constant for inhibitor-enzyme complexes via the T1 rho and T2 (CPMG) methods.
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31 May 2018
Dynamic activation of an allosteric regulatory protein.
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28 November 2018
Application of methyl-TROSY NMR to test allosteric models describing effects of nucleotide binding to aspartate transcarbamoylase
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28 November 2018
TROSY-based z-exchange spectroscopy: application to the determination of the activation energy for intermolecular protein translocation between specific sites on different DNA molecules
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28 November 2018
Probing supramolecular structure from measurement of methyl (1)H-(13)C residual dipolar couplings
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28 November 2018
Faithful estimation of dynamics parameters from CPMG relaxation dispersion measurements.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086649
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28 November 2018
Reaction coupling through interdomain contacts in imidazole glycerol phosphate synthase
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4086649
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28 November 2018
Redox-dependent structural differences in putidaredoxin derived from homologous structure refinement via residual dipolar couplings
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PubMed Central
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28 November 2018
Theoretical study of R(1rho) rotating-frame and R2 free-precession relaxation in the presence of n-site chemical exchange.
1 reference
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28 November 2018
Probing slow dynamics in high molecular weight proteins by methyl-TROSY NMR spectroscopy: application to a 723-residue enzyme.
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28 November 2018
Disulfide Bond Isomerization in Basic Pancreatic Trypsin Inhibitor: Multisite Chemical Exchange Quantified by CPMG Relaxation Dispersion and Chemical Shift Modeling
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28 November 2018
Substrate-induced changes in the ammonia channel for imidazole glycerol phosphate synthase
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28 November 2018
R1rho relaxation outside of the fast-exchange limit.
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28 November 2018
Estimating the time scale of chemical exchange of proteins from measurements of transverse relaxation rates in solution.
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28 November 2018
Bicelles: a model membrane system for all seasons?
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https://pubmed.ncbi.nlm.nih.gov/22198279
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12 December 2020
based on heuristic
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Allosteric regulation of Hsp70 chaperones involves a conserved interdomain linker
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https://pubmed.ncbi.nlm.nih.gov/22198279
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12 December 2020
based on heuristic
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Concerted dynamics link allosteric sites in the PBX homeodomain
1 reference
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/22198279
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A TROSY CPMG sequence for characterizing chemical exchange in large proteins
1 reference
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/22198279
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Two-state allosteric behavior in a single-domain signaling protein
1 reference
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/22198279
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The use of model selection in the model-free analysis of protein dynamics
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/22198279
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Distinct Subunits for the Regulation and Catalytic Activity of Aspartate Transcarbamylase*
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22198279
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Quaternary structure changes in aspartate transcarbamylase studied by X-ray solution scattering. Signal transmission following effector binding
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PubMed
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Comparison of pH-dependent allostery and dissociation for phosphofructokinases from Artemia embryos and rabbit muscle: nature of the enzymes acylated with diethylpyrocarbonate
1 reference
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Molecular code for cooperativity in hemoglobin
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https://pubmed.ncbi.nlm.nih.gov/22198279
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Protein backbone dynamics revealed by quasi spectral density function analysis of amide N-15 nuclei
1 reference
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/22198279
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
X-ray scattering titration of the quaternary structure transition of aspartate transcarbamylase with a bisubstrate analogue: influence of nucleotide effectors
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22198279
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.ABB.2011.10.023
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3658698
OpenCitations bibliographic resource ID
3658698
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3658698
PMCID
4086649
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3658698
PubMed ID
22198279
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3658698
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