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From trans to cis: transcriptional regulatory networks in neocortical development
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title
From trans to cis: transcriptional regulatory networks in neocortical development
(English)
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author
Nenad Sestan
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3
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author name string
Mikihito Shibata
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1
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Forrest O. Gulden
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2
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language of work or name
English
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publication date
February 2015
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published in
Trends in Genetics
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PubMed
volume
31
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PubMed
issue
2
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PubMed
page(s)
77-87
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PubMed
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
MicroRNA-92b regulates the development of intermediate cortical progenitors in embryonic mouse brain.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Transcriptional regulation and its misregulation in disease.
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28 September 2017
Role for Lhx2 in corticogenesis through regulation of progenitor differentiation
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28 September 2017
A high-resolution enhancer atlas of the developing telencephalon
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28 September 2017
Personal and population genomics of human regulatory variation
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28 September 2017
ChIA-PET analysis of transcriptional chromatin interactions.
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28 September 2017
Transcription factors: from enhancer binding to developmental control
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28 September 2017
Genomic approaches towards finding cis-regulatory modules in animals
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Cis-regulatory control of corticospinal system development and evolution
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Sequencing chromosomal abnormalities reveals neurodevelopmental loci that confer risk across diagnostic boundaries.
1 reference
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Transcriptional co-regulation of neuronal migration and laminar identity in the neocortex
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
retrieved
28 September 2017
Haploinsufficiency of SOX5 at 12p12.1 is associated with developmental delays with prominent language delay, behavior problems, and mild dysmorphic features
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
RP58/ZNF238 directly modulates proneurogenic gene levels and is required for neuronal differentiation and brain expansion
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Temporal dynamics and genetic control of transcription in the human prefrontal cortex
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Neuronal activity-regulated gene transcription in synapse development and cognitive function
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Tbr1 and Fezf2 regulate alternate corticofugal neuronal identities during neocortical development
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Developmental genetics of vertebrate glial-cell specification.
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28 September 2017
Annual Research Review: Development of the cerebral cortex: implications for neurodevelopmental disorders
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Developmental regulation and individual differences of neuronal H3K4me3 epigenomes in the prefrontal cortex
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Two-tier transcriptional control of oligodendrocyte differentiation
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
The cell-intrinsic requirement of Sox6 for cortical interneuron development
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
SOX6 controls dorsal progenitor identity and interneuron diversity during neocortical development
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
SOX5 postmitotically regulates migration, postmigratory differentiation, and projections of subplate and deep-layer neocortical neurons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Neurogenin 2 controls cortical neuron migration through regulation of Rnd2.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
The determination of projection neuron identity in the developing cerebral cortex
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Cux-1 and Cux-2 control the development of Reelin expressing cortical interneurons
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Global control regions and regulatory landscapes in vertebrate development and evolution
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Satb2 regulates callosal projection neuron identity in the developing cerebral cortex
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution.
1 reference
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Distinct cis-regulatory elements from the Dlx1/Dlx2 locus mark different progenitor cell populations in the ganglionic eminences and different subtypes of adult cortical interneurons
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Accelerated evolution of conserved noncoding sequences in humans
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Pax6 controls cerebral cortical cell number by regulating exit from the cell cycle and specifies cortical cell identity by a cell autonomous mechanism
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Structure and evolution of transcriptional regulatory networks
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Transcriptional regulation of cortical neuron migration by POU domain factors
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
retrieved
28 September 2017
Tbr1 regulates differentiation of the preplate and layer 6.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 September 2017
Species-dependent posttranscriptional regulation of NOS1 by FMRP in the developing cerebral cortex.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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31 May 2018
MicroRNA-9 regulates neurogenesis in mouse telencephalon by targeting multiple transcription factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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31 May 2018
Insulinoma-associated 1 has a panneurogenic role and promotes the generation and expansion of basal progenitors in the developing mouse neocortex
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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31 May 2018
Acetylation mimics within individual core histone tail domains indicate distinct roles in regulating the stability of higher-order chromatin structure
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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31 May 2018
Large-scale identification of coregulated enhancer networks in the adult human brain
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 November 2018
The timing of upper-layer neurogenesis is conferred by sequential derepression and negative feedback from deep-layer neurons.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
retrieved
28 November 2018
The zinc finger transcription factor RP58 negatively regulates Rnd2 for the control of neuronal migration during cerebral cortical development.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
retrieved
28 November 2018
RP58 regulates the multipolar-bipolar transition of newborn neurons in the developing cerebral cortex
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
retrieved
28 November 2018
The 5'-flanking region of the RP58 coding sequence shows prominent promoter activity in multipolar cells in the subventricular zone during corticogenesis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
retrieved
28 November 2018
Essential roles of Notch signaling in maintenance of neural stem cells in developing and adult brains.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 November 2018
Committed neuronal precursors confer astrocytic potential on residual neural precursor cells.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
retrieved
28 November 2018
SATB2 interacts with chromatin-remodeling molecules in differentiating cortical neurons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 November 2018
In vivo function of Rnd2 in the development of neocortical pyramidal neurons
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 November 2018
Phosphorylation of Neurogenin2 specifies the migration properties and the dendritic morphology of pyramidal neurons in the neocortex.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 November 2018
Molecular insights into human brain evolution
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28 November 2018
Direct and concentration-dependent regulation of the proneural gene Neurogenin2 by Pax6.
1 reference
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 November 2018
DNA methylation is a critical cell-intrinsic determinant of astrocyte differentiation in the fetal brain.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 November 2018
Emx1 and Emx2 functions in development of dorsal telencephalon.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4382006
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28 November 2018
Identification of cis-elements and transcription factors regulating neuronal activity-dependent transcription of human BDNF gene
1 reference
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PubMed
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.TIG.2014.12.004
0 references
PMC publication ID
4382006
1 reference
stated in
PubMed
PubMed publication ID
25624274
1 reference
stated in
PubMed
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