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Use of the Microbiome in the Practice of Epidemiology: A Primer on -Omic Technologies
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scholarly article
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stated in
PubMed
review article
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stated in
Europe PubMed Central
title
Use of the Microbiome in the Practice of Epidemiology: A Primer on -Omic Technologies
(English)
0 references
main subject
microbiome
0 references
epidemiology
1 reference
based on heuristic
inferred from title
author name string
B. Foxman
series ordinal
1
1 reference
stated in
Crossref
E. T. Martin
series ordinal
2
1 reference
stated in
Crossref
language of work or name
English
1 reference
stated in
PubMed
publication date
1 July 2015
1 reference
stated in
PubMed
published in
American Journal of Epidemiology
1 reference
stated in
PubMed
volume
182
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stated in
PubMed
issue
1
1 reference
stated in
PubMed
page(s)
1-8
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stated in
PubMed
cites work
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
1 reference
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PubMed Central
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21 March 2017
The intestinal microbiome in early life: health and disease
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PubMed Central
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21 March 2017
The vaginal microbiota: what have we learned after a decade of molecular characterization?
1 reference
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PubMed Central
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21 March 2017
Computational meta'omics for microbial community studies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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21 March 2017
A roadmap to the human virome
1 reference
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PubMed Central
reference URL
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21 March 2017
A framework for human microbiome research
1 reference
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PubMed Central
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21 March 2017
A human gut microbial gene catalogue established by metagenomic sequencing
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PubMed Central
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21 March 2017
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
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PubMed Central
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21 March 2017
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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21 March 2017
A core gut microbiome in obese and lean twins
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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21 March 2017
The human mycobiome in health and disease
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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21 March 2017
The gut microbiota--masters of host development and physiology
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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21 March 2017
Duodenal infusion of donor feces for recurrent Clostridium difficile
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PubMed Central
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21 March 2017
Diversity, stability and resilience of the human gut microbiota
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PubMed Central
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21 March 2017
The virome in mammalian physiology and disease
1 reference
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PubMed Central
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21 March 2017
Human skin microbiota: high diversity of DNA viruses identified on the human skin by high throughput sequencing
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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21 March 2017
Clostridium difficile infection: An overview of the disease and its pathogenesis, epidemiology and interventions
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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21 March 2017
Altering the Intestinal Microbiota during a Critical Developmental Window Has Lasting Metabolic Consequences
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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7 April 2017
Diet rapidly and reproducibly alters the human gut microbiome
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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7 April 2017
Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
1 reference
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PubMed Central
reference URL
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7 April 2017
The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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7 April 2017
Gut microbiota from twins discordant for obesity modulate metabolism in mice
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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7 April 2017
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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7 April 2017
Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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7 April 2017
Cancer and the gut microbiota: an unexpected link
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PubMed Central
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28 September 2017
The preterm placental microbiome varies in association with excess maternal gestational weight gain
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Temporal variability is a personalized feature of the human microbiome
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Exploring preterm birth as a polymicrobial disease: an overview of the uterine microbiome
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Archaea and the human gut: new beginning of an old story.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Perturbation of the human microbiome as a contributor to inflammatory bowel disease
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Human genetics shape the gut microbiome.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Dialogue between skin microbiota and immunity
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Characterization and quantification of the fungal microbiome in serial samples from individuals with cystic fibrosis
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Fecal microbiota transplantation in inflammatory bowel disease: beyond the excitement
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Oral, capsulized, frozen fecal microbiota transplantation for relapsing Clostridium difficile infection.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
retrieved
28 September 2017
Advancing the microbiome research community
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Metagenomic analysis of double-stranded DNA viruses in healthy adults
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
retrieved
28 September 2017
Which is more important for classifying microbial communities: who's there or what they can do?
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Longitudinal analysis of microbial interaction between humans and the indoor environment
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Elevated levels of circulating DNA in cardiovascular disease patients: metagenomic profiling of microbiome in the circulation
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Conducting a microbiome study
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Molecular bases and role of viruses in the human microbiome
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Effects of polysaccharopeptide from Trametes versicolor and amoxicillin on the gut microbiome of healthy volunteers: a randomized clinical trial
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
The effects of intestinal tract bacterial diversity on mortality following allogeneic hematopoietic stem cell transplantation.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Altered oral viral ecology in association with periodontal disease
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Dynamics and associations of microbial community types across the human body
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Bacteriophages: an underestimated role in human and animal health?
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Secretory antibodies in breast milk promote long-term intestinal homeostasis by regulating the gut microbiota and host gene expression
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28 September 2017
Kingdom-agnostic metagenomics and the importance of complete characterization of enteric microbial communities
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Meta'omic analytic techniques for studying the intestinal microbiome
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Temporal response of the human virome to immunosuppression and antiviral therapy
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PubMed Central
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28 September 2017
The human virome: new tools and concepts
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Rapid evolution of the human gut virome
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PubMed Central
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28 September 2017
The role of the bacterial microbiome in lung disease
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PubMed Central
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28 September 2017
Topographic diversity of fungal and bacterial communities in human skin
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Association between living environment and human oral viral ecology
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Fecal microbiota transplantation for Clostridium difficile infection: systematic review and meta-analysis.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Characterization of the oral fungal microbiota in smokers and non-smokers.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Characterization of the vaginal micro- and mycobiome in asymptomatic reproductive-age Estonian women
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Genomic variation landscape of the human gut microbiome
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Evaluation of 16S rDNA-based community profiling for human microbiome research
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
A core human microbiome as viewed through 16S rRNA sequence clusters
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Sequence analysis of the human virome in febrile and afebrile children
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Emerging view of the human virome
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
The relationship of the oral microbiotia to periodontal health and disease
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Natural genetic variation caused by small insertions and deletions in the human genome
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
The bacterial microbiota in the oral mucosa of rural Amerindians
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Comparative metagenomics and population dynamics of the gut microbiota in mother and infant
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Forensic identification using skin bacterial communities
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Redefining chronic viral infection
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4498138
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28 September 2017
Long-term follow-up of colonoscopic fecal microbiota transplant for recurrent Clostridium difficile infection
1 reference
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Crossref
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https://api.crossref.org/works/10.1093%2FAJE%2FKWV102
retrieved
21 January 2018
Identifiers
DOI
10.1093/AJE/KWV102
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1462925
OpenCitations bibliographic resource ID
1462925
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1462925
PMC publication ID
4498138
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1462925
PubMed publication ID
26025238
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1462925
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