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Dramatic structural and thermodynamic consequences of repacking a protein's hydrophobic core
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scholarly article
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Europe PubMed Central
PubMed ID
11188696
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11188696%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
title
Dramatic structural and thermodynamic consequences of repacking a protein's hydrophobic core
(English)
1 reference
stated in
Europe PubMed Central
PubMed ID
11188696
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11188696%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
main subject
hydrophobicity
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inferred from title
author
Axel T. Brunger
series ordinal
4
1 reference
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Europe PubMed Central
PubMed ID
11188696
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11188696%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
author name string
M A Willis
series ordinal
1
1 reference
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Europe PubMed Central
PubMed ID
11188696
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11188696%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
B Bishop
series ordinal
2
1 reference
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Europe PubMed Central
PubMed ID
11188696
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11188696%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
L Regan
series ordinal
3
1 reference
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Europe PubMed Central
PubMed ID
11188696
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11188696%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
publication date
1 December 2000
1 reference
stated in
Europe PubMed Central
PubMed ID
11188696
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11188696%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
number of pages
10
1 reference
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inferred from page(s)
published in
Structure
1 reference
stated in
Europe PubMed Central
PubMed ID
11188696
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11188696%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
volume
8
1 reference
stated in
Europe PubMed Central
PubMed ID
11188696
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11188696%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
page(s)
1319-1328
1 reference
stated in
Europe PubMed Central
PubMed ID
11188696
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11188696%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
issue
12
1 reference
stated in
Europe PubMed Central
PubMed ID
11188696
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11188696%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
cites work
Areas, volumes, packing and protein structure
1 reference
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Crossref
reference URL
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7 January 2021
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Influence of interior packing and hydrophobicity on the stability of a protein.
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7 January 2021
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The role of internal packing interactions in determining the structure and stability of a protein
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7 January 2021
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Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
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The hydrophobic core of Escherichia coli thioredoxin shows a high tolerance to nonconservative single amino acid substitutions
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
based on heuristic
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Effect of cavity-creating mutations in the hydrophobic core of chymotrypsin inhibitor 2
1 reference
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reference URL
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7 January 2021
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The crystal structure of a mutant protein with altered but improved hydrophobic core packing
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7 January 2021
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Redesigning the hydrophobic core of a four-helix-bundle protein
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reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
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What makes a protein a protein? Hydrophobic core designs that specify stability and structural properties
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
based on heuristic
inferred from DOI database lookup
The response of T4 lysozyme to large-to-small substitutions within the core and its relation to the hydrophobic effect.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
based on heuristic
inferred from DOI database lookup
A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
based on heuristic
inferred from DOI database lookup
De novo design of a model peptide sequence to examine the effects of single amino acid substitutions in the hydrophobic core on both stability and oligomerization state of coiled-coils
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
based on heuristic
inferred from DOI database lookup
Characterization of a helical protein designed from first principles
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Crossref
reference URL
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7 January 2021
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Protein design by binary patterning of polar and nonpolar amino acids
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7 January 2021
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Cooperatively folded proteins in random sequence libraries
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7 January 2021
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Core-directed protein design. I. An experimental method for selecting stable proteins from combinatorial libraries
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7 January 2021
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Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
based on heuristic
inferred from DOI database lookup
De novo design of the hydrophobic cores of proteins
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
based on heuristic
inferred from DOI database lookup
Protein design automation
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
based on heuristic
inferred from DOI database lookup
Prediction of protein side-chain conformation by packing optimization.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
based on heuristic
inferred from DOI database lookup
Repacking protein cores with backbone freedom: structure prediction for coiled coils
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
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inferred from DOI database lookup
Structure of the ColE1 rop protein at 1.7 A resolution
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
based on heuristic
inferred from DOI database lookup
The structure of ColE1 rop in solution
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
based on heuristic
inferred from DOI database lookup
Determinants of RNA hairpin loop-loop complex stability.
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7 January 2021
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inferred from DOI database lookup
Protein plasticity to the extreme: changing the topology of a 4-alpha-helical bundle with a single amino acid substitution
1 reference
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
Dissecting RNA-protein interactions: RNA-RNA recognition by Rop
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7 January 2021
based on heuristic
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The Alacoil: a very tight, antiparallel coiled-coil of helices
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Buried polar residues and structural specificity in the GCN4 leucine zipper
1 reference
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7 January 2021
based on heuristic
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The heat capacity of proteins
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7 January 2021
based on heuristic
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Prediction of binding energetics from structure using empirical parameterization
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7 January 2021
based on heuristic
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Satisfying hydrogen bonding potential in proteins
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Occluded molecular surface: analysis of protein packing.
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Side-chain conformational entropy in protein folding
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
On the entropy of protein folding
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
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inferred from DOI database lookup
Amino-acid substitutions in a surface turn modulate protein stability
1 reference
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Crossref
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7 January 2021
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ColE1-compatible vectors for high-level expression of cloned DNAs from the T7 promoter.
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Conformational stability of HPr: the histidine-containing phosphocarrier protein from Bacillus subtilis
1 reference
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Crossref
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7 January 2021
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SAmBA: an interactive software for optimizing the design of biological macromolecules crystallization experiments.
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
based on heuristic
inferred from DOI database lookup
Processing of X-ray diffraction data collected in oscillation mode
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Crossref
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7 January 2021
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inferred from DOI database lookup
Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
based on heuristic
inferred from DOI database lookup
A highly automated heavy-atom search procedure for macromolecular structures
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
based on heuristic
inferred from DOI database lookup
Direct observation of protein solvation and discrete disorder with experimental crystallographic phases
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
based on heuristic
inferred from DOI database lookup
Methods used in the structure determination of bovine mitochondrial F1 ATPase
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Improved methods for building protein models in electron density maps and the location of errors in these models
1 reference
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Crossref
reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Improved Fourier coefficients for maps using phases from partial structures with errors
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Torsion angle dynamics: reduced variable conformational sampling enhances crystallographic structure refinement
1 reference
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7 January 2021
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inferred from DOI database lookup
Incorporation of prior phase information strengthens maximum-likelihood structure refinement
1 reference
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7 January 2021
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Stereochemically restrained refinement of macromolecular structures
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Backbone-dependent rotamer library for proteins. Application to side-chain prediction
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
based on heuristic
inferred from DOI database lookup
MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
based on heuristic
inferred from DOI database lookup
An extensively modified version of MolScript that includes greatly enhanced coloring capabilities
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
based on heuristic
inferred from DOI database lookup
Raster3D: photorealistic molecular graphics
1 reference
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7 January 2021
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inferred from DOI database lookup
PROMOTIF--a program to identify and analyze structural motifs in proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
based on heuristic
inferred from DOI database lookup
The interpretation of protein structures: Estimation of static accessibility
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0969-2126%2800%2900544-X
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7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1016/S0969-2126(00)00544-X
1 reference
stated in
Europe PubMed Central
PubMed ID
11188696
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11188696%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
PubMed ID
11188696
1 reference
stated in
Europe PubMed Central
PubMed ID
11188696
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11188696%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
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