(Q27648837)

English

A novel structural fold in polysaccharide lyases: Bacillus subtilis family 11 rhamnogalacturonan lyase YesW with an eight-bladed beta-propeller

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scholarly article

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A novel structural fold in polysaccharide lyases: Bacillus subtilis family 11 rhamnogalacturonan lyase YesW with an eight-bladed beta-propeller (English)

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1 reference

based on heuristic

inferred from title

Bacillus subtilis

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based on heuristic

inferred from title

5

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author name string

Akihito Ochiai

1

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Takafumi Itoh

2

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Yukie Maruyama

3

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Akiko Kawamata

4

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Wataru Hashimoto

6

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Kousaku Murata

7

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language of work or name

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publication date

21 December 2007

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Journal of Biological Chemistry

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282

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51

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37134-45

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Structure and function of the primary cell walls of plants

1 reference

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Chemistry and uses of pectin--a review

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Structures and mechanisms of glycosyl hydrolases

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Exudate gums: occurrence, production, and applications

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The secretome of the plant pathogenic bacterium Erwinia chrysanthemi

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Elevated temperature enhances virulence of Erwinia carotovora subsp. carotovora strain EC153 to plants and stimulates production of the quorum sensing signal, N-acyl homoserine lactone, and extracellular proteins

1 reference

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Pectinolytic systems of two aerobic sporogenous bacterial strains with high activity on pectin.

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21 January 2018

Rhamnogalacturonase B from Aspergillus aculeatus is a rhamnogalacturonan alpha-L-rhamnopyranosyl-(1-->4)-alpha-D-galactopyranosyluronide lyase

1 reference

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21 January 2018

The structure of Bacillus subtilis pectate lyase in complex with calcium

1 reference

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21 January 2018

The Refined Three-Dimensional Structure of Pectate Lyase C from Erwinia chrysanthemi at 2.2 Angstrom Resolution (Implications for an Enzymatic Mechanism)

1 reference

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21 January 2018

Two crystal structures of pectin lyase A from Aspergillus reveal a pH driven conformational change and striking divergence in the substrate-binding clefts of pectin and pectate lyases

1 reference

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The tree-dimensional structure of aspergillus niger pectin lyase B at 1.7-A resolution

1 reference

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Crystal structure of polygalacturonase from Erwinia carotovora ssp. carotovora

1 reference

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1.68-A crystal structure of endopolygalacturonase II from Aspergillus niger and identification of active site residues by site-directed mutagenesis

1 reference

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The crystal structure of pectate lyase Pel9A from Erwinia chrysanthemi

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https://api.crossref.org/works/10.1074%2FJBC.M704663200

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Aspergillus enzymes involved in degradation of plant cell wall polysaccharides

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M704663200

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Regulation of pectinolysis in Erwinia chrysanthemi.

1 reference

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The RhaS activator controls the Erwinia chrysanthemi 3937 genes rhiN, rhiT and rhiE involved in rhamnogalacturonan catabolism

1 reference

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21 January 2018

Plant cell wall degradation by saprophytic Bacillus subtilis strains: gene clusters responsible for rhamnogalacturonan depolymerization

1 reference

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21 January 2018

A novel glycoside hydrolase family 105: the structure of family 105 unsaturated rhamnogalacturonyl hydrolase complexed with a disaccharide in comparison with family 88 enzyme complexed with the disaccharide

1 reference

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21 January 2018

A structural basis for depolymerization of alginate by polysaccharide lyase family-7.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M704663200

21 January 2018

Crystal structure of alginate lyase A1-III complexed with trisaccharide product at 2.0 A resolution

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M704663200

21 January 2018

High-resolution crystal structure of Arthrobacter aurescens chondroitin AC lyase: an enzyme-substrate complex defines the catalytic mechanism

1 reference

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Crystal structure of heparinase II from Pedobacter heparinus and its complex with a disaccharide product

1 reference

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Crystal structure of Bacillus sp. GL1 xanthan lyase complexed with a substrate: insights into the enzyme reaction mechanism

1 reference

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A structural factor responsible for substrate recognition by Bacillus sp. GL1 xanthan lyase that acts specifically on pyruvated side chains of xanthan

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M704663200

21 January 2018

Rhamnogalacturonan lyase reveals a unique three-domain modular structure for polysaccharide lyase family 4.

1 reference

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21 January 2018

A rhamnogalacturonan lyase in the Clostridium cellulolyticum cellulosome

1 reference

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A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding

1 reference

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Crystallization and preliminary X-ray analysis of the rhamnogalacturonan lyase YesW from Bacillus subtilis strain 168, a member of polysaccharide lyase family 11.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M704663200

21 January 2018

Processing of X-ray diffraction data collected in oscillation mode

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M704663200

21 January 2018

Automated MAD and MIR structure solution

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M704663200

21 January 2018

Automated protein model building combined with iterative structure refinement

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M704663200

21 January 2018

Coot: model-building tools for molecular graphics

1 reference

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Refinement of macromolecular structures by the maximum-likelihood method

1 reference

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A solution for the best rotation to relate two sets of vectors

1 reference

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21 January 2018

The CCP4 suite: programs for protein crystallography

1 reference

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PROCHECK: a program to check the stereochemical quality of protein structures

1 reference

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MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

1 reference

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Raster3D Version 2.0. A program for photorealistic molecular graphics

1 reference

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Characterization and implications of Ca2+ binding to pectate lyase C

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M704663200

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The Protein Data Bank

1 reference

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Beta-hairpin families in globular proteins

1 reference

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Conformation of Polypeptides and Proteins

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M704663200

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Protein structure comparison by alignment of distance matrices

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M704663200

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Unusual structural features in the parallel beta-helix in pectate lyases

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M704663200

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Crystal structure of chondroitinase B from Flavobacterium heparinum and its complex with a disaccharide product at 1.7 A resolution

1 reference

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21 January 2018

Crystal structure of alginate lyase A1-III from Sphingomonas species A1 at 1.78 A resolution

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M704663200

21 January 2018

Azospirillum irakense pectate lyase displays a toroidal fold

1 reference

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21 January 2018

Convergent evolution sheds light on the anti-beta -elimination mechanism common to family 1 and 10 polysaccharide lyases

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M704663200

21 January 2018

Crystal structure of chondroitin AC lyase, a representative of a family of glycosaminoglycan degrading enzymes

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M704663200

21 January 2018

Hyaluronan binding and degradation by Streptococcus agalactiae hyaluronate lyase

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M704663200

21 January 2018

Crystal Structure of Proteus vulgaris Chondroitin Sulfate ABC Lyase I at 1.9Å Resolution

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M704663200

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Crystal structure of Bacillus sp. GL1 xanthan lyase, which acts on the side chains of xanthan

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M704663200

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Structural basis of hyaluronan degradation by Streptococcus pneumoniae hyaluronate lyase

1 reference

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Crystal structure of the alginate (poly alpha-l-guluronate) lyase from Corynebacterium sp. at 1.2 A resolution

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Structure and function of a hypothetical Pseudomonas aeruginosa protein PA1167 classified into family PL-7: a novel alginate lyase with a beta-sandwich fold

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Structure of a group A streptococcal phage-encoded virulence factor reveals a catalytically active triple-stranded beta-helix

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Prediction of EF-hand calcium-binding proteins and analysis of bacterial EF-hand proteins

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Identifiers

10.1074/JBC.M704663200

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