(Q27666331)

3

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author name string

Deepak T Nair

1

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Robert E Johnson

2

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Satya Prakash

4

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Aneel K Aggarwal

Journal of Molecular Biology

5

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language of work or name

English

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publication date

11 February 2011

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published in

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volume

406

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issue

1

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page(s)

18-28

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cites work

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DNA Polymerase Substrate Specificity: SIDE CHAIN MODULATION OF THE"A-RULE"

20 March 2017

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Structure of the Human Rev1–DNA–dNTP Ternary Complex

20 March 2017

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DNA Synthesis across an Abasic Lesion by Human DNA Polymerase ι

20 March 2017

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DNA oligonucleotides with A, T, G or C opposite an abasic site: structure and dynamics

20 March 2017

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Caught bending the A-rule: crystal structures of translesion DNA synthesis with a non-natural nucleotide

20 March 2017

1 reference

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Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution

20 March 2017

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The CCP4 suite: programs for protein crystallography

20 March 2017

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Structure validation by Calpha geometry: phi,psi and Cbeta deviation

20 March 2017

1 reference

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

20 March 2017

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Improved methods for building protein models in electron density maps and the location of errors in these models

20 March 2017

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Deoxycytidyl transferase activity of yeast REV1 protein

20 March 2017

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Rev1 employs a novel mechanism of DNA synthesis using a protein template

20 March 2017

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Mutations affecting segment number and polarity in Drosophila

20 March 2017

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20 March 2017

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Rate of depurination of native deoxyribonucleic acid

20 March 2017

1 reference

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Mutagenesis by apurinic/apyrimidinic sites

20 March 2017

1 reference

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Eukaryotic translesion synthesis DNA polymerases: specificity of structure and function

20 March 2017

1 reference

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Eukaryotic polymerases iota and zeta act sequentially to bypass DNA lesions

7 April 2017

1 reference

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DNA polymerases: structural diversity and common mechanisms

7 April 2017

1 reference

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Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.

7 April 2017

1 reference

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Mutational specificity and genetic control of replicative bypass of an abasic site in yeast

7 April 2017

1 reference

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Self-catalyzed site-specific depurination of guanine residues within gene sequences

29 September 2017

1 reference

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Crystallographic snapshots of a replicative DNA polymerase encountering an abasic site

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127253

The "A" rule revisited: polymerases as determinants of mutational specificity

29 September 2017

1 reference

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Quantitative measurement of translesion replication in human cells: evidence for bypass of abasic sites by a replicative DNA polymerase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127253

Yeast Rev1 protein is a G template-specific DNA polymerase

29 September 2017

1 reference

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Endogenous apurinic/apyrimidinic sites in genomic DNA of mammalian tissues

29 September 2017

1 reference

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Proliferating cell nuclear antigen promotes DNA synthesis past template lesions by mammalian DNA polymerase delta

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127253

The base excision repair pathway

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127253

Mechanistic studies on depurination and apurinic site chain breakage in oligodeoxyribonucleotides

29 September 2017

1 reference

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An abasic site in DNA. Solution conformation determined by proton NMR and molecular mechanics calculations.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127253

Mutation frequency and spectrum resulting from a single abasic site in a single-stranded vector

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127253

Translesional synthesis on DNA templates containing a single abasic site. A mechanistic study of the "A rule".

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127253

Nucleotide insertion kinetics opposite abasic lesions in DNA.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127253

Mechanism of abasic lesion bypass catalyzed by a Y-family DNA polymerase.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127253

Human DNA polymerase iota incorporates dCTP opposite template G via a G.C + Hoogsteen base pair

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127253

Replication by human DNA polymerase-iota occurs by Hoogsteen base-pairing

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127253

Snapshots of replication through an abasic lesion; structural basis for base substitutions and frameshifts

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127253

Evaluating the contribution of base stacking during translesion DNA replication

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127253

A specific partner for abasic damage in DNA

27 November 2018

1 reference

12 December 2020

The abasic site as a challenge to DNA polymerase. A nuclear magnetic resonance study of G, C and T opposite a model abasic site

1 reference

12 December 2020

Processing of X-ray diffraction data collected in oscillation mode

1 reference

12 December 2020

Conformational analysis of the sugar ring in nucleosides and nucleotides. New description using the concept of pseudorotation

1 reference

12 December 2020

Insertion of nucleotides opposite apurinic/apyrimidinic sites in deoxyribonucleic acid during in vitro synthesis: uniqueness of adenine nucleotides

1 reference

12 December 2020

Coding properties of poly(deoxycytidylic acid) templates containing uracil or apyrimidinic sites: in vitro modulation of mutagenesis by deoxyribonucleic acid repair enzymes

1 reference

12 December 2020

Thermodynamic consequences of an abasic lesion in duplex DNA are strongly dependent on base sequence

1 reference

12 December 2020