(Q27676961)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22291906%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

title

Structure-function studies of DNA binding domain of response regulator KdpE reveals equal affinity interactions at DNA half-sites (English)

1 reference

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21 January 2020

3

1 reference

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21 January 2020

Dipak N Patil

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22291906%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

author name string

Anoop Narayanan

1

1 reference

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21 January 2020

Lake N Paul

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22291906%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

Pravindra Kumar

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22291906%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

Dinesh A Yernool

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22291906%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

language of work or name

English

0 references

publication date

23 January 2012

1 reference

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21 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22291906%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

volume

7

1 reference

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21 January 2020

issue

1

1 reference

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21 January 2020

page(s)

e30102

1 reference

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Creative Commons Attribution 4.0 International

21 January 2020

copyright license

start time

23 January 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Domain Orientation in the Inactive Response Regulator Mycobacterium tuberculosis MtrA Provides a Barrier to Activation † , ‡

20 March 2017

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20 March 2017

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Tandem DNA recognition by PhoB, a two-component signal transduction transcriptional activator

20 March 2017

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DNA bending by an adenine-thymine tract and its role in gene regulation

20 March 2017

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Solution structure of the DNA-binding domain of NtrC with three alanine substitutions

20 March 2017

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The DNA-binding domain of OmpR: crystal structures of a winged helix transcription factor

20 March 2017

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Structure of the Escherichia coli response regulator NarL

20 March 2017

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Physiological and genetic responses of bacteria to osmotic stress

20 March 2017

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KdpD and KdpE, proteins that control expression of the kdpABC operon, are members of the two-component sensor-effector class of regulators

20 March 2017

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Coot: model-building tools for molecular graphics

20 March 2017

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Refinement of macromolecular structures by the maximum-likelihood method

20 March 2017

1 reference

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WebLogo: A Sequence Logo Generator

20 March 2017

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Size-Distribution Analysis of Macromolecules by Sedimentation Velocity Ultracentrifugation and Lamm Equation Modeling

20 March 2017

1 reference

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Two-component signal transduction

20 March 2017

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20 March 2017

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Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level

7 April 2017

1 reference

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The analysis of macromolecular interactions by sedimentation equilibrium

9 May 2017

1 reference

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Origins of specificity in protein-DNA recognition.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264566

Diversity of structure and function of response regulator output domains

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264566

Receiver domain structure and function in response regulator proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264566

The complexity of the 'simple' two-component system KdpD/KdpE in Escherichia coli.

29 September 2017

1 reference

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Molecular strategies for phosphorylation-mediated regulation of response regulator activity

29 September 2017

1 reference

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DNA binding kinetics of two response regulators, PlnC and PlnD, from the bacteriocin regulon of Lactobacillus plantarum C11.

29 September 2017

1 reference

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Probing the roles of the two different dimers mediated by the receiver domain of the response regulator PhoB.

29 September 2017

1 reference

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Amino acids important for DNA recognition by the response regulator OmpR.

29 September 2017

1 reference

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Macromolecular recognition in the Protein Data Bank

29 September 2017

1 reference

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Structural classification of bacterial response regulators: diversity of output domains and domain combinations

29 September 2017

1 reference

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Macromolecular size-and-shape distributions by sedimentation velocity analytical ultracentrifugation.

29 September 2017

1 reference

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A common dimerization interface in bacterial response regulators KdpE and TorR.

29 September 2017

1 reference

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Sedimentation velocity analysis of heterogeneous protein-protein interactions: Lamm equation modeling and sedimentation coefficient distributions c(s)

29 September 2017

1 reference

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Sedimentation velocity analysis of heterogeneous protein-protein interactions: sedimentation coefficient distributions c(s) and asymptotic boundary profiles from Gilbert-Jenkins theory

29 September 2017

1 reference

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The Roles and Regulation of Potassium in Bacteria

29 September 2017

1 reference

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Osmosensing and osmoregulatory compatible solute accumulation by bacteria

29 September 2017

1 reference

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Recognition of specific DNA sequences.

29 September 2017

1 reference

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SmtB-DNA and protein-protein interactions in the formation of the cyanobacterial metallothionein repression complex: Zn2+ does not dissociate the protein-DNA complex in vitro

29 September 2017

1 reference

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The unphosphorylated receiver domain of PhoB silences the activity of its output domain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264566

Two-component and phosphorelay signal transduction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264566

Regulation of kdp operon expression in Escherichia coli: evidence against turgor as signal for transcriptional control

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264566

A common switch in activation of the response regulators NtrC and PhoB: phosphorylation induces dimerization of the receiver modules

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264566

Osmotic control of kdp operon expression in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264566

Two-component regulatory systems responsive to environmental stimuli share strongly conserved domains with the nitrogen assimilation regulatory genes ntrB and ntrC.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264566

The KDP ATPase of Escherichia colia

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264566

Site-directed mutagenesis of the χ subunit of DNA polymerase III and single-stranded DNA-binding protein of E. coli reveals key residues for their interaction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264566

Electrophoretic mobility shift assay (EMSA) for detecting protein-nucleic acid interactions

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264566

An immediate and steep increase in ATP concentration in response to reduced turgor pressure in Escherichia coli B.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264566

Clarification of the structural and functional features of the osmoregulated kdp operon of Escherichia coli

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264566

Membrane topology analysis of the sensor kinase KdpD of Escherichia coli.

2 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0030102

Signal transduction between the two regulatory components involved in the regulation of the kdpABC operon in Escherichia coli: phosphorylation-dependent functioning of the positive regulator, KdpE.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0030102

Transcription regulation of ompF and ompC by a single transcription factor, OmpR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0030102

The N-terminal input domain of the sensor kinase KdpD of Escherichia coli stabilizes the interaction between the cognate response regulator KdpE and the corresponding DNA-binding site

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0030102

Sedimentation equilibrium analysis of protein interactions with global implicit mass conservation constraints and systematic noise decomposition

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0030102

A single-amino-acid substitution in the C terminus of PhoP determines DNA-binding specificity of the virulence-associated response regulator from Mycobacterium tuberculosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0030102

Location of DNA-binding segment of a positive regulator, OmpR, involved in activation of the ompF and ompC genes of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0030102

Two levels of cooperativeness in the binding of TodT to the tod operon promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0030102

The molecular replacement method

21 January 2018

1 reference

12 December 2020

A revised equation relating DNA buoyant density to guanine plus cytosine content

1 reference

12 December 2020

Negatively charged phospholipids influence the activity of the sensor kinase KdpD of Escherichia coli

1 reference

12 December 2020

Gene activation by the Escherichia coli positive regulator, OmpR. Phosphorylation-independent mechanism of activation by an OmpR mutant

1 reference

12 December 2020

DNA binding of PhoB and its interaction with RNA polymerase

1 reference

12 December 2020

Location of phosphorylation site and DNA-binding site of a positive regulator, OmpR, involved in activation of the osmoregulatory genes of Escherichia coli

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0030102

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22291906%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22291906%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

PubMed publication ID

22291906

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22291906%20AND%20SRC:MED&resulttype=core&format=json