(Q27701537)

English

Structural and molecular basis for the novel catalytic mechanism and evolution of DddP, an abundant peptidase-like bacterial Dimethylsulfoniopropionate lyase: a new enzyme from an old fold

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scholarly article

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Structural and molecular basis for the novel catalytic mechanism and evolution of DddP, an abundant peptidase-like bacterial Dimethylsulfoniopropionate lyase: a new enzyme from an old fold (English)

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bacterial evolution

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based on heuristic

inferred from title

author name string

Peng Wang

1

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Xiu-Lan Chen

2

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Chun-Yang Li

3

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Xiang Gao

4

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De-yu Zhu

5

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Bin-Bin Xie

6

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Qi-Long Qin

7

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Xi-Ying Zhang

8

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Hai-Nan Su

9

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Bai-Cheng Zhou

10

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Lu-ying Xun

11

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Yu-Zhong Zhang

12

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language of work or name

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publication date

October 2015

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Molecular Microbiology

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98

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2

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289-301

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PHENIX: building new software for automated crystallographic structure determination

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Ambiguous evidence for assigning DddQ as a dimethylsulfoniopropionate lyase and oceanic dimethylsulfide producer

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Sequence and structure comparison suggest that methionine aminopeptidase, prolidase, aminopeptidase P, and creatinase share a common fold

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Oceanic phytoplankton, atmospheric sulphur, cloud albedo and climate

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Molecular genetic analysis of a dimethylsulfoniopropionate lyase that liberates the climate-changing gas dimethylsulfide in several marine alpha-proteobacteria and Rhodobacter sphaeroides.

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

DddY, a periplasmic dimethylsulfoniopropionate lyase found in taxonomically diverse species of Proteobacteria.

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Catabolism of dimethylsulphoniopropionate: microorganisms, enzymes and genes

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Coot: model-building tools for molecular graphics

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https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

The mechanism of inhibition of carboxypeptidase A by 1,10-phenanthroline

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Pfam: the protein families database

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Quantum dynamics of hydride transfer catalyzed by bimetallic electrophilic catalysis: synchronous motion of Mg(2+) and H(-) in xylose isomerase

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Kinetic and crystallographic analysis of mutant Escherichia coli aminopeptidase P: insights into substrate recognition and the mechanism of catalysis

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

The Structure of RdDddP from Roseobacter denitrificans Reveals That DMSP Lyases in the DddP-Family Are Metalloenzymes

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

The dddP gene of Roseovarius nubinhibens encodes a novel lyase that cleaves dimethylsulfoniopropionate into acrylate plus dimethyl sulfide

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

The opportunistic coral pathogen Aspergillus sydowii contains dddP and makes dimethyl sulfide from dimethylsulfoniopropionate.

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Reply to Tawfik et al.: DddQ is a dimethylsulfoniopropionate lyase involved in dimethylsulfoniopropionate catabolism in marine bacterial cells

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Molecular insight into bacterial cleavage of oceanic dimethylsulfoniopropionate into dimethyl sulfide

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Atmospheric Dimethyl Sulphide and the Natural Sulphur Cycle

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Silicibacter lacuscaerulensis gen. nov., sp. nov., a mesophilic moderately halophilic bacterium characteristic of the Blue Lagoon geothermal lake in Iceland

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

A graphical user interface to the CCP4 program suite

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Structural and mechanistic studies of enolase

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Dimethylsulfoniopropionate-dependent demethylase (DmdA) from Pelagibacter ubique and Silicibacter pomeroyi

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Molecular mechanism of strict substrate specificity of an extradiol dioxygenase, DesB, derived from Sphingobium sp. SYK-6

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Structural and regulatory genes required to make the gas dimethyl sulfide in bacteria

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

The dddP gene, encoding a novel enzyme that converts dimethylsulfoniopropionate into dimethyl sulfide, is widespread in ocean metagenomes and marine bacteria and also occurs in some Ascomycete fungi

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Molecular dissection of bacterial acrylate catabolism--unexpected links with dimethylsulfoniopropionate catabolism and dimethyl sulfide production.

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

DddQ, a novel, cupin-containing, dimethylsulfoniopropionate lyase in marine roseobacters and in uncultured marine bacteria

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

DddW, a third DMSP lyase in a model Roseobacter marine bacterium, Ruegeria pomeroyi DSS-3.

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Strong relationship between DMS and the solar radiation dose over the global surface ocean

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Structure and mechanism of a proline-specific aminopeptidase from Escherichia coli

1 reference

https://api.crossref.org/works/10.1111%2FMMI.13119

21 January 2018

Identifiers

10.1111/MMI.13119

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