(Q27729745)

English

Base-pair opening and spermine binding—B-DNA features displayed in the crystal structure of a gal operon fragment: implications for protein-DNA recognition

scientific article published on June 11, 1995

In more languages

Statements

scholarly article

0 references

Base-pair opening and spermine binding--B-DNA features displayed in the crystal structure of a gal operon fragment: implications for protein-DNA recognition (English)

0 references

Base-pair opening and spermine binding—B-DNA features displayed in the crystal structure of a gal operon fragment: implications for protein-DNA recognition (English)

1 reference

10.1093/NAR/23.11.2065

https://api.crossref.org/works/10.1093/NAR/23.11.2065

3 June 2024

crystal structure

0 references

protein structure

0 references

author name string

L. W. Tari

1

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A7596838

3 June 2024

A. S. Secco

2

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A7596838

3 June 2024

language of work or name

0 references

publication date

11 June 1995

0 references

full work available at URL

https://europepmc.org/articles/pmc306985?pdf=render

Portable Document Format

online access status

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A7596838

3 June 2024

https://europepmc.org/articles/PMC306985

online access status

content deliverer

Europe PubMed Central

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A7596838

3 June 2024

https://europepmc.org/articles/PMC306985?pdf=render

Portable Document Format

online access status

content deliverer

Europe PubMed Central

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A7596838

3 June 2024

http://academic.oup.com/nar/article-pdf/23/11/2065/7123187/23-11-2065.pdf

Portable Document Format

1 reference

10.1093/NAR/23.11.2065

https://api.crossref.org/works/10.1093/NAR/23.11.2065

3 June 2024

Nucleic Acids Research

0 references

23

0 references

11

0 references

2065-73

0 references

Definitions and nomenclature of nucleic acid structure components

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

20 March 2017

Ternary interactions of spermine with DNA: 4'-epiadriamycin and other DNA: anthracycline complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

20 March 2017

Protein-DNA conformational changes in the crystal structure of a lambda Cro-operator complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

20 March 2017

Crystal and molecular structure of a DNA fragment: d(CGTGAATTCACG)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

20 March 2017

Crystal structure analysis of the B-DNA dodecamer CGTGAATTCACG

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

20 March 2017

Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

7 April 2017

Defining the structure of irregular nucleic acids: conventions and principles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

7 April 2017

Transcription factors: structural families and principles of DNA recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

7 April 2017

How much hydration is necessary for the stabilisation of DNA-duplex?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

29 September 2017

Structural and dynamic studies of a non-self-complementary dodecamer DNA duplex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

29 September 2017

Detection of localized DNA flexibility

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

29 September 2017

Computational studies of polynucleotide flexibility

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

29 September 2017

Possible molecular detent in the DNA structure at regulatory sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

29 September 2017

A control element within a structural gene: The gal operon of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

29 September 2017

Spermine-DNA interactions: a theoretical study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

29 September 2017

A twenty-two-fold increase in the relative affinity of estrogen receptor to poly (dA-dC).poly (dG-dT) in the presence of polyamines

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

29 September 2017

Characterization of base-pair opening in deoxynucleotide duplexes using catalyzed exchange of the imino proton

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

29 September 2017

Unusual helical packing in crystals of DNA bearing a mutation hot spot

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

29 September 2017

Lambda repressor recognizes the approximately 2-fold symmetric half-operator sequences asymmetrically

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

29 September 2017

Chemical probes of the conformation of DNA modified by cis-diamminedichloroplatinum(II).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

29 September 2017

Distortions induced in double-stranded oligonucleotides by the binding of cis- or trans-diammine-dichloroplatinum(II) to the d(GTG) sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

29 September 2017

Implications and concepts of polyamine-nucleic acid interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

29 September 2017

Photoaffinity polyamines: sequence-specific interactions with DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

29 September 2017

DNA structure from A to Z.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

29 September 2017

Effects of sequence and length on imino proton exchange and base pair opening kinetics in DNA oligonucleotide duplexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

29 September 2017

Transcriptional enhancer related DNA sequences: anomalous1H NMR NOE crosspeaks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

29 September 2017

Origin of the asymmetrical contact between lac repressor and lac operator DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

2 June 2018

Free energy of imperfect nucleic acid helices. 3. Small internal loops resulting from mismatches.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

2 June 2018

Protein-DNA interaction. No code for recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

2 June 2018

Poly(dA-dT).poly(dA-dT) two-pathway proton exchange mechanism. Effect of general and specific base catalysis on deuteration rates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

2 June 2018

DNA bending by negative regulatory proteins: Gal and Lac repressors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

2 June 2018

Structure of a B-DNA decamer with a central T-A step: C-G-A-T-T-A-A-T-C-G

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

2 June 2018

Effect of ethylation of operator-phosphates on Gal repressor binding. DNA contortion by repressor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

19 June 2018

Molecular dynamics study of the base pair opening process in the self-complementary octanucleotide d(CTGATCAG).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

27 November 2018

Contributions of the thymine methyl group to the specific recognition of poly- and mononucleotides: an analysis of the relative free energies of solvation of thymine and uracil.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306985

27 November 2018

Structure of the lambda complex at 2.5 A resolution: details of the repressor-operator interactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/7596838

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Electrostatics of Polymorphic DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/7596838

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Proton exchange and internal motions in two chromomycin dimer-DNA oligomer complexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/7596838

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Optimised parameters for A-DNA and B-DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/7596838

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure of a B-DNA dodecamer. III. Geometry of hydration

1 reference

https://pubmed.ncbi.nlm.nih.gov/7596838

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Equilibrium dialysis studies of polyamine binding to DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/7596838

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interaction between polyamines and nucleic acids or phospholipids

1 reference

https://pubmed.ncbi.nlm.nih.gov/7596838

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ionic and structural effects on the thermal helix-coil transition of DNA complexed with natural and synthetic polyamines

1 reference

https://pubmed.ncbi.nlm.nih.gov/7596838

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of polyamines and basic proteins on cleavage of DNA by restriction endonucleases

1 reference

https://pubmed.ncbi.nlm.nih.gov/7596838

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Spermidine increases the accuracy of type II restriction endonucleases. Suppression of cleavage at degenerate, non-symmetrical sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/7596838

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nuclear magnetic resonance studies of polyamine binding to a defined DNA sequence

1 reference

https://pubmed.ncbi.nlm.nih.gov/7596838

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Spermine-nucleic acid interactions: a theoretical study

1 reference

https://pubmed.ncbi.nlm.nih.gov/7596838

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Spermine as a modulator of membrane fusion: interactions with acidic phospholipids

1 reference

https://pubmed.ncbi.nlm.nih.gov/7596838

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A single mode of DNA base-pair opening drives imino proton exchange

1 reference

https://pubmed.ncbi.nlm.nih.gov/7596838

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/23.11.2065

0 references

0 references

0 references

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q27729745&oldid=2171825768"