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Evidence that the transcription elongation function of Rpb9 is involved in transcription-coupled DNA repair in Saccharomyces cerevisiae
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scholarly article
1 reference
stated in
PubMed
PubMed ID
17030604
retrieved
1 December 2016
title
Evidence that the transcription elongation function of Rpb9 is involved in transcription-coupled DNA repair in Saccharomyces cerevisiae
(English)
1 reference
stated in
PubMed
PubMed ID
17030604
retrieved
1 December 2016
main subject
cell biology
0 references
Saccharomyces cerevisiae
0 references
DNA-directed RNA polymerase II core subunit RPB9 YGL070C
1 reference
stated in
GOA release 2020-03-11
author name string
Xuefeng Chen
series ordinal
5
0 references
Shisheng Li
series ordinal
1
0 references
Runqiang Chen
series ordinal
3
0 references
Christine Ruggiero
series ordinal
4
0 references
Baojin Ding
series ordinal
2
0 references
language of work or name
English
0 references
publication date
December 2006
0 references
published in
Molecular and Cellular Biology
1 reference
stated in
PubMed
PubMed ID
17030604
retrieved
1 December 2016
volume
26
0 references
page(s)
9430-41
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issue
24
0 references
cites work
Requirement of ELC1 for RNA polymerase II polyubiquitylation and degradation in response to DNA damage in Saccharomyces cerevisiae
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RNA polymerase II subunit Rpb9 is important for transcriptional fidelity in vivo
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Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage
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Functional Distinctions between IMP Dehydrogenase Genes in Providing Mycophenolate Resistance and Guanine Prototrophy to Yeast
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20 March 2017
Molecular evidence for a positive role of Spt4 in transcription elongation
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PubMed Central
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20 March 2017
Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo
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A Rad26-Def1 complex coordinates repair and RNA pol II proteolysis in response to DNA damage
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20 March 2017
The Rpb9 subunit of RNA polymerase II binds transcription factor TFIIE and interferes with the SAGA and elongator histone acetyltransferases
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PubMed Central
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20 March 2017
Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution
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PubMed Central
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20 March 2017
Rsp5 ubiquitin-protein ligase mediates DNA damage-induced degradation of the large subunit of RNA polymerase II in Saccharomyces cerevisiae
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PubMed Central
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20 March 2017
Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae
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PubMed Central
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20 March 2017
DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs
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PubMed Central
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20 March 2017
Transcription elongation through DNA arrest sites. A multistep process involving both RNA polymerase II subunit RPB9 and TFIIS.
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PubMed Central
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20 March 2017
UV-induced ubiquitination of RNA polymerase II: a novel modification deficient in Cockayne syndrome cells
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PubMed Central
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20 March 2017
RAD26, the functional S. cerevisiae homolog of the Cockayne syndrome B gene ERCC6.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
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20 March 2017
Role of a small RNA pol II subunit in TATA to transcription start site spacing
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PubMed Central
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20 March 2017
Eucaryotic RNA polymerase conditional mutant that rapidly ceases mRNA synthesis
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PubMed Central
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20 March 2017
A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae
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20 March 2017
FACT relieves DSIF/NELF-mediated inhibition of transcriptional elongation and reveals functional differences between P-TEFb and TFIIH
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PubMed Central
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20 March 2017
NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
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20 March 2017
ERCC6, a member of a subfamily of putative helicases, is involved in Cockayne's syndrome and preferential repair of active genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
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20 March 2017
Transcript cleavage by RNA polymerase II arrested by a cyclobutane pyrimidine dimer in the DNA template
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
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20 March 2017
Precision and functional specificity in mRNA decay
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PubMed Central
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7 April 2017
Tackling the protease problem in Saccharomyces cerevisiae
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PubMed Central
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7 April 2017
Nucleotide excision repair
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
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29 September 2017
Members of the SAGA and Mediator complexes are partners of the transcription elongation factor TFIIS.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
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29 September 2017
Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
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29 September 2017
Cbf1p modulates chromatin structure, transcription and repair at the Saccharomyces cerevisiae MET16 locus
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
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29 September 2017
Dissecting transcription-coupled and global genomic repair in the chromatin of yeast GAL1-10 genes
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
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29 September 2017
Rpb4 and Rpb9 mediate subpathways of transcription-coupled DNA repair in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
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29 September 2017
Promoting elongation with transcript cleavage stimulatory factors
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
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29 September 2017
E. coli Transcription repair coupling factor (Mfd protein) rescues arrested complexes by promoting forward translocation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
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29 September 2017
Multisubunit RNA polymerases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
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29 September 2017
The target of rapamycin signaling pathway regulates mRNA turnover in the yeast Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
Ultraviolet radiation alters the phosphorylation of RNA polymerase II large subunit and accelerates its proteasome-dependent degradation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
UV light-induced degradation of RNA polymerase II is dependent on the Cockayne's syndrome A and B proteins but not p53 or MLH1.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
Spt4 modulates Rad26 requirement in transcription-coupled nucleotide excision repair
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
Transcriptional elements involved in the repression of ribosomal protein synthesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
The transcription-repair coupling factor CSA is required for efficient repair only during the elongation stages of RNA polymerase II transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
Ultraviolet radiation-induced ubiquitination and proteasomal degradation of the large subunit of RNA polymerase II. Implications for transcription-coupled DNA repair
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
Nucleotide sequence context effect of a cyclobutane pyrimidine dimer upon RNA polymerase II transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
Sequence-specific and domain-specific DNA repair in xeroderma pigmentosum and Cockayne syndrome cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
Functional interaction between TFIIB and the Rpb9 (Ssu73) subunit of RNA polymerase II in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
DNA repair domains within a human gene: selective repair of sequences near the transcription initiation site
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
The increment of SII-facilitated transcript cleavage varies dramatically between elongation competent and incompetent RNA polymerase II ternary complexes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
Deficient repair of the transcribed strand of active genes in Cockayne's syndrome cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
The RAD7 and RAD16 genes, which are essential for pyrimidine dimer removal from the silent mating type loci, are also required for repair of the nontranscribed strand of an active gene in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
Preferential DNA repair of an active gene in human cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
Conditional mutations occur predominantly in highly conserved residues of RNA polymerase II subunits
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
The genetic defect in Cockayne syndrome is associated with a defect in repair of UV-induced DNA damage in transcriptionally active DNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
The genetic defect in the Chinese hamster ovary cell mutant UV61 permits moderate selective repair of cyclobutane pyrimidine dimers in an expressed gene
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
Yeast glycolytic mRNAs are differentially regulated
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
Preferential repair of cyclobutane pyrimidine dimers in the transcribed strand of a gene in yeast chromosomes and plasmids is dependent on transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
The RNA polymerase II elongation complex. Factor-dependent transcription elongation involves nascent RNA cleavage
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
SPT4, SPT5 and SPT6 interactions: effects on transcription and viability in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
29 September 2017
Excision repair at the level of the nucleotide in the Saccharomyces cerevisiae MFA2 gene: mapping of where enhanced repair in the transcribed strand begins or ends and identification of only a partial rad16 requisite for repairing upstream control s
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
2 June 2018
DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
2 June 2018
Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
2 June 2018
Site-specific DNA repair at the nucleosome level in a yeast minichromosome.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
2 June 2018
Yeast RNA polymerase II subunit RPB9 is essential for growth at temperature extremes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
2 June 2018
The RNA polymerase II ternary complex cleaves the nascent transcript in a 3'----5' direction in the presence of elongation factor SII
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
2 June 2018
Molecular mechanism of transcription-repair coupling.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
2 June 2018
DNA damage-induced Def1-RNA polymerase II interaction and Def1 requirement for polymerase ubiquitylation in vitro.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
27 November 2018
Behavior of T7 RNA polymerase and mammalian RNA polymerase II at site-specific cisplatin adducts in the template DNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
27 November 2018
Transcription, nucleosome positioning and protein binding modulate nucleotide excision repair of the Saccharomyces cerevisiae MET17 promoter.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
27 November 2018
RNA polymerase II subunit Rpb9 regulates transcription elongation in vivo.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
27 November 2018
Nucleotide level detection of cyclobutane pyrimidine dimers using oligonucleotides and magnetic beads to facilitate labelling of DNA fragments incised at the dimers and chemical sequencing reference ladders.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698543
retrieved
27 November 2018
Yeast RNA Polymerase II Subunit RPB9
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/17030604
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Low- and high-resolution mapping of DNA damage at specific sites
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/17030604
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
6-Azauracil inhibition of GTP biosynthesis in Saccharomyces cerevisiae
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/17030604
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
RNA polymerase II subunit RPB9 is required for accurate start site selection
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/17030604
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Transcription elongation factor S-II is not required for transcription-coupled repair in yeast
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/17030604
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1128/MCB.01656-06
1 reference
stated in
PubMed
PubMed ID
17030604
retrieved
1 December 2016
PMCID
1698543
0 references
PubMed ID
17030604
1 reference
stated in
PubMed
PubMed ID
17030604
retrieved
1 December 2016
ResearchGate publication ID
6763820
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