(Q27935287)

1 December 2016

title

The Pet309 pentatricopeptide repeat motifs mediate efficient binding to the mitochondrial COX1 transcript in yeast (English)

1 reference

1 December 2016

0 references

1 reference

GOA release 2020-03-11

author name string

Angélica Zamudio-Ochoa

1

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Yolanda Camacho-Villasana

2

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Aldo E García-Guerrero

3

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Xochitl Pérez-Martínez

4

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language of work or name

English

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publication date

2014

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1 reference

describes a project that uses

1 December 2016

volume

11

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issue

7

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page(s)

953-67

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ImageQuant

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4179968/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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Structure of a PLS-class Pentatricopeptide Repeat Protein Provides Insights into Mechanism of RNA Recognition

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DMR1 (CCM1/YGR150C) of Saccharomyces cerevisiae encodes an RNA-binding protein from the pentatricopeptide repeat family required for the maintenance of the mitochondrial 15S ribosomal RNA.

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A shared RNA-binding site in the Pet54 protein is required for translational activation and group I intron splicing in yeast mitochondria

20 March 2017

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20 March 2017

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The pentatricopeptide repeats present in Pet309 are necessary for translation but not for stability of the mitochondrial COX1 mRNA in yeast.

20 March 2017

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Mss51p and Cox14p jointly regulate mitochondrial Cox1p expression in Saccharomyces cerevisiae

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LRP130, a pentatricopeptide motif protein with a noncanonical RNA-binding domain, is bound in vivo to mitochondrial and nuclear RNAs

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The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae

20 March 2017

1 reference

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Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4

20 March 2017

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Purification and properties of the major nuclease from mitochondria of Saccharomyces cerevisiae.

20 March 2017

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20 March 2017

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LRPPRC mutation suppresses cytochrome oxidase activity by altering mitochondrial RNA transcript stability in a mouse model

20 March 2017

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20 March 2017

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Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plants

29 September 2017

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A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins.

29 September 2017

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RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing

29 September 2017

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Protein-mediated protection as the predominant mechanism for defining processed mRNA termini in land plant chloroplasts

29 September 2017

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A genome wide study in fission yeast reveals nine PPR proteins that regulate mitochondrial gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

The pentatricopeptide repeat protein OTP87 is essential for RNA editing of nad7 and atp1 transcripts in Arabidopsis mitochondria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

Pentatricopeptide repeat proteins stimulate mRNA adenylation/uridylation to activate mitochondrial translation in trypanosomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

LRPPRC and SLIRP interact in a ribonucleoprotein complex that regulates posttranscriptional gene expression in mitochondria.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

Identification of proteins associated with the yeast mitochondrial RNA polymerase by tandem affinity purification.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

Site-specific binding of a PPR protein defines and stabilizes 5' and 3' mRNA termini in chloroplasts

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

Pentatricopeptide repeat proteins: a socket set for organelle gene expression.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

Protein synthesis and assembly in mitochondrial disorders

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

Cytochrome c oxidase biogenesis: new levels of regulation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

On the expansion of the pentatricopeptide repeat gene family in plants

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

TPRpred: a tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

Aberrant translation of cytochrome c oxidase subunit 1 mRNA species in the absence of Mss51p in the yeast Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

RNA immunoprecipitation and microarray analysis show a chloroplast Pentatricopeptide repeat protein to be associated with the 5' region of mRNAs whose translation it activates

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

Mss51p promotes mitochondrial Cox1p synthesis and interacts with newly synthesized Cox1p.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

Nam1p, a protein involved in RNA processing and translation, is coupled to transcription through an interaction with yeast mitochondrial RNA polymerase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

The PPR motif - a TPR-related motif prevalent in plant organellar proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

Substitution of an invariant nucleotide at the base of the highly conserved '530-loop' of 15S rRNA causes suppression of yeast mitochondrial ochre mutations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

The pentatricopeptide repeat protein PPR5 stabilizes a specific tRNA precursor in maize chloroplasts

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

The MSS51 gene product is required for the translation of the COX1 mRNA in yeast mitochondria.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4179968

A pentatricopeptide repeat protein is a site recognition factor in chloroplast RNA editing.

2 June 2018

1 reference

PPR motifs of the nucleus-encoded factor, PGR3, function in the selective and distinct steps of chloroplast gene expression in Arabidopsis

21 January 2018

1 reference

Molecular identification and function of cis- and trans-acting determinants for petA transcript stability in Chlamydomonas reinhardtii chloroplasts

21 January 2018

1 reference

Revisiting the yeast PPR proteins--application of an Iterative Hidden Markov Model algorithm reveals new members of the rapidly evolving family

21 January 2018

1 reference

Overexpression of the COX2 translational activator, Pet111p, prevents translation of COX1 mRNA and cytochrome c oxidase assembly in mitochondria of Saccharomyces cerevisiae.

21 January 2018

1 reference

Mutagenesis of individual pentatricopeptide repeat motifs affects RNA binding activity and reveals functional partitioning of Arabidopsis PROTON gradient regulation3.

21 January 2018

1 reference

The pentatricopeptide repeat-SMR protein ATP4 promotes translation of the chloroplast atpB/E mRNA.

21 January 2018

1 reference

Two interacting proteins are necessary for the editing of the NdhD-1 site in Arabidopsis plastids.

21 January 2018

1 reference

A rapid ribosome profiling method elucidates chloroplast ribosome behavior in vivo.

21 January 2018

1 reference

Isolation and subfractionation of mitochondria from the yeast Saccharomyces cerevisiae

21 January 2018

1 reference

12 December 2020

Analysis of mitochondrial translation products in Vivo and in organello in yeast

1 reference

12 December 2020

An in vitro transcription assay for yeast mitochondria using organellar lysates

1 reference

12 December 2020

Formation of the Arabidopsis pentatricopeptide repeat family

1 reference

12 December 2020

Use of the nuc1 null mutant for analysis of yeast mitochondrial nucleoids

1 reference

12 December 2020

SnapShot: Antibiotic inhibition of protein synthesis I

1 reference

12 December 2020

release_iilz3ablxfhx5eyges4ll35lea

Identifiers

DOI

10.4161/RNA.29780

0 references

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/iilz3ablxfhx5eyges4ll35lea

24 November 2022

mapped directly with Wikidata item

PMC publication ID

4179968

0 references

1 reference