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Identification of Prp40, a novel essential yeast splicing factor associated with the U1 small nuclear ribonucleoprotein particle
scientific article
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scholarly article
1 reference
stated in
PubMed
PubMed ID
8622699
retrieved
1 December 2016
title
Identification of Prp40, a novel essential yeast splicing factor associated with the U1 small nuclear ribonucleoprotein particle
(English)
1 reference
stated in
PubMed
PubMed ID
8622699
retrieved
1 December 2016
main subject
Prp40p YKL012W
1 reference
stated in
GOA release 2020-03-11
ribonucleoprotein complex
1 reference
based on heuristic
inferred from title
author name string
H Y Kao
series ordinal
1
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P G Siliciano
series ordinal
2
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language of work or name
English
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publication date
March 1996
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published in
Molecular and Cellular Biology
1 reference
stated in
PubMed
PubMed ID
8622699
retrieved
1 December 2016
volume
16
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page(s)
960-7
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issue
3
0 references
cites work
An enhancer screen identifies a gene that encodes the yeast U1 snRNP A protein: implications for snRNP protein function in pre-mRNA splicing
1 reference
stated in
PubMed Central
reference URL
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retrieved
20 March 2017
Commitment of yeast pre-mRNA to the splicing pathway requires a novel U1 small nuclear ribonucleoprotein polypeptide, Prp39p
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
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20 March 2017
The association of the U1-specific 70K and C proteins with U1 snRNPs is mediated in part by common U snRNP proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
20 March 2017
Early commitment of yeast pre-mRNA to the spliceosome pathway
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
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20 March 2017
A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae
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PubMed Central
reference URL
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20 March 2017
A common RNA recognition motif identified within a defined U1 RNA binding domain of the 70K U1 snRNP protein
1 reference
stated in
PubMed Central
reference URL
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20 March 2017
Saccharomyces cerevisiae U1 small nuclear RNA secondary structure contains both universal and yeast-specific domains
1 reference
stated in
PubMed Central
reference URL
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20 March 2017
The Saccharomyces cerevisiae MYO2 gene encodes an essential myosin for vectorial transport of vesicles
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
20 March 2017
The yeast homolog of the U1 snRNP protein 70K is encoded by the SNP1 gene
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
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20 March 2017
5-Fluoroorotic acid as a selective agent in yeast molecular genetics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
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20 March 2017
High efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
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20 March 2017
The WW domain: a signalling site in dystrophin?
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
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20 March 2017
WWP, a new amino acid motif present in single or multiple copies in various proteins including dystrophin and the SH3-binding Yes-associated protein YAP65
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
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20 March 2017
Characterization of the mammalian YAP (Yes-associated protein) gene and its role in defining a novel protein module, the WW domain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
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20 March 2017
Spliceosome assembly in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
20 March 2017
An essential snRNA from S. cerevisiae has properties predicted for U4, including interaction with a U6-like snRNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
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20 March 2017
Dynamic RNA-RNA interactions in the spliceosome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
7 April 2017
A compensatory base change in U1 snRNA suppresses a 5' splice site mutation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
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7 April 2017
A family of versatile centromeric vectors designed for use in the sectoring-shuffle mutagenesis assay in Saccharomyces cerevisiae
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
7 April 2017
Yeast mRNA splicing in vitro
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
7 April 2017
Identification of functional U1 snRNA-pre-mRNA complexes committed to spliceosome assembly and splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
7 April 2017
Cloning genes by complementation in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
7 April 2017
Stabilization and ribosome association of unspliced pre-mRNAs in a yeast upf1- mutant
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
29 September 2017
The amino-terminal domain of yeast U1-70K is necessary and sufficient for function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
29 September 2017
Sequence of U1 RNA from Drosophila melanogaster: implications for U1 secondary structure and possible involvement in splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
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29 September 2017
Autogenous regulation of splicing of the transcript of a yeast ribosomal protein gene
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
29 September 2017
Fractionation and characterization of a yeast mRNA splicing extract
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
29 September 2017
A U1 snRNA:pre-mRNA base pairing interaction is required early in yeast spliceosome assembly but does not uniquely define the 5' cleavage site.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
29 September 2017
Loop I of U1 small nuclear RNA is the only essential RNA sequence for binding of specific U1 small nuclear ribonucleoprotein particle proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
29 September 2017
Direct, sequence-specific binding of the human U1-70K ribonucleoprotein antigen protein to loop I of U1 small nuclear RNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
29 September 2017
The U1 RNA-binding site of the U1 small nuclear ribonucleoprotein (snRNP)-associated A protein suggests a similarity with U2 snRNPs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
29 September 2017
A novel GTP-binding protein, Sar1p, is involved in transport from the endoplasmic reticulum to the Golgi apparatus.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
29 September 2017
Unexpected flexibility in an evolutionarily conserved protein-RNA interaction: genetic analysis of the Sm binding site
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
29 September 2017
The yeast branchpoint sequence is not required for the formation of a stable U1 snRNA-pre-mRNA complex and is recognized in the absence of U2 snRNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
29 September 2017
Cloning of a yeast U1 snRNP 70K protein homologue: functional conservation of an RNA-binding domain between humans and yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
29 September 2017
An essential splicing factor, SLU7, mediates 3' splice site choice in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
29 September 2017
Requirements for U2 snRNP addition to yeast pre-mRNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
29 September 2017
Electrophoresis of ribonucleoproteins reveals an ordered assembly pathway of yeast splicing complexes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
2 June 2018
5' splice site selection in yeast: genetic alterations in base-pairing with U1 reveal additional requirements.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
2 June 2018
An ATP-independent complex commits pre-mRNA to the mammalian spliceosome assembly pathway
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
2 June 2018
The sequence of a 9.3 kb segment located on the left arm of the yeast chromosome XI reveals five open reading frames including the CCE1 gene and putative products related to MYO2 and to the ribosomal protein L10
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
2 June 2018
The "spliceosome": yeast pre-messenger RNA associates with a 40S complex in a splicing-dependent reaction.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
20 June 2018
Lariat structures are in vivo intermediates in yeast pre-mRNA splicing.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
27 November 2018
The yeast ribosomal protein L32 and its gene.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
27 November 2018
An early hierarchic role of U1 small nuclear ribonucleoprotein in spliceosome assembly.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=231078
retrieved
27 November 2018
Vectors for constitutive and inducible gene expression in yeast
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/8622699
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A functional association between the 5' and 3' splice site is established in the earliest prespliceosome complex (E) in mammals
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/8622699
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Isolation of S. cerevisiae snRNPs: comparison of U1 and U4/U6.U5 to their human counterparts
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/8622699
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The U1 small nuclear RNA-protein complex selectively binds a 5' splice site in vitro
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/8622699
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
mRNA splicing efficiency in yeast and the contribution of nonconserved sequences
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/8622699
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A multicomponent complex is involved in the splicing of messenger RNA precursors
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/8622699
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Stepwise assembly of a pre-mRNA splicing complex requires U-snRNPs and specific intron sequences
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/8622699
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1128/MCB.16.3.960
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PMCID
231078
0 references
PubMed ID
8622699
1 reference
stated in
PubMed
PubMed ID
8622699
retrieved
1 December 2016
ResearchGate publication ID
14577260
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