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Interaction of a DNA zip code with the nuclear pore complex promotes H2A.Z incorporation and INO1 transcriptional memory
scientific article
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instance of
scholarly article
1 reference
stated in
PubMed
PubMed ID
20932479
retrieved
1 December 2016
title
Interaction of a DNA zip code with the nuclear pore complex promotes H2A.Z incorporation and INO1 transcriptional memory
(English)
1 reference
stated in
PubMed
PubMed ID
20932479
retrieved
1 December 2016
main subject
cell biology
0 references
Nucleoporin NUP2 YLR335W
1 reference
stated in
GOA release 2020-03-11
Mlp2p YIL149C
1 reference
stated in
GOA release 2020-03-11
FG-nucleoporin NUP42 YDR192C
1 reference
stated in
GOA release 2020-03-11
FG-nucleoporin NUP60 YAR002W
1 reference
stated in
GOA release 2020-03-11
Nucleocytoplasmic transporter NUP145 YGL092W
1 reference
stated in
GOA release 2020-03-11
Nup84p YDL116W
1 reference
stated in
GOA release 2020-03-11
RNA export factor GLE2 YER107C
1 reference
stated in
GOA release 2020-03-11
Nup157p YER105C
1 reference
stated in
GOA release 2020-03-11
FG-nucleoporin NUP100 YKL068W
1 reference
stated in
GOA release 2020-03-11
Nup133p YKR082W
1 reference
stated in
GOA release 2020-03-11
Nup120p YKL057C
1 reference
stated in
GOA release 2020-03-11
author name string
William H Light
series ordinal
1
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Donna G Brickner
series ordinal
2
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Veronica R Brand
series ordinal
3
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Jason H Brickner
series ordinal
4
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language of work or name
English
0 references
publication date
8 October 2010
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published in
Molecular Cell
1 reference
stated in
PubMed
PubMed ID
20932479
retrieved
1 December 2016
volume
40
0 references
page(s)
112-25
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issue
1
0 references
cites work
Nuclear pore proteins nup153 and megator define transcriptionally active regions in the Drosophila genome
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PubMed Central
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DNA zip codes control an ancient mechanism for gene targeting to the nuclear periphery
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PubMed Central
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Gene loops function to maintain transcriptional memory through interaction with the nuclear pore complex
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PubMed Central
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The Tup1 corepressor directs Htz1 deposition at a specific promoter nucleosome marking the GAL1 gene for rapid activation
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Glucose-responsive regulators of gene expression in Saccharomyces cerevisiae function at the nuclear periphery via a reverse recruitment mechanism
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SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope
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The mobile nucleoporin Nup2p and chromatin-bound Prp20p function in endogenous NPC-mediated transcriptional control
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20 March 2017
Preferential occupancy of histone variant H2AZ at inactive promoters influences local histone modifications and chromatin remodeling
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PubMed Central
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20 March 2017
Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning
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PubMed Central
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20 March 2017
Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin
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PubMed Central
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20 March 2017
Gene recruitment of the activated INO1 locus to the nuclear membrane
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PubMed Central
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20 March 2017
ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex
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PubMed Central
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20 March 2017
Genome-wide localization of the nuclear transport machinery couples transcriptional status and nuclear organization
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PubMed Central
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20 March 2017
Peering through the pore: nuclear pore complex structure, assembly, and function
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PubMed Central
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20 March 2017
Roles for H2A.Z and its acetylation in GAL1 transcription and gene induction, but not GAL1-transcriptional memory
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PubMed Central
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29 September 2017
Dominant role for signal transduction in the transcriptional memory of yeast GAL genes
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PubMed Central
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29 September 2017
Chromatin-bound nuclear pore components regulate gene expression in higher eukaryotes
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
Nucleoporins directly stimulate expression of developmental and cell-cycle genes inside the nucleoplasm
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
Mechanisms that specify promoter nucleosome location and identity
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
Transcriptional memory at the nuclear periphery
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
The functional importance of telomere clustering: global changes in gene expression result from SIR factor dispersion
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
Activator control of nucleosome occupancy in activation and repression of transcription
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
The DNA-encoded nucleosome organization of a eukaryotic genome
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PubMed Central
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29 September 2017
H2AZ is enriched at polycomb complex target genes in ES cells and is necessary for lineage commitment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
The meaning of gene positioning
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
Recruitment to the nuclear periphery can alter expression of genes in human cells
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PubMed Central
reference URL
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29 September 2017
Global histone acetylation induces functional genomic reorganization at mammalian nuclear pore complexes
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PubMed Central
reference URL
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29 September 2017
A genetic locus targeted to the nuclear periphery in living cells maintains its transcriptional competence
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
SAGA and a novel Drosophila export complex anchor efficient transcription and mRNA export to NPC.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
The nuclear envelope and transcriptional control.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
Cotranscriptional recruitment to the mRNA export receptor Mex67p contributes to nuclear pore anchoring of activated genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
Chromosome territories--a functional nuclear landscape.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
Patterning chromatin: form and function for H2A.Z variant nucleosomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
retrieved
29 September 2017
Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
Developmentally induced changes in transcriptional program alter spatial organization across chromosomes
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
Separation of silencing from perinuclear anchoring functions in yeast Ku80, Sir4 and Esc1 proteins.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
Chromosomal site-specific double-strand breaks are efficiently targeted for repair by oligonucleotides in yeast
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
Chromatin boundaries in budding yeast: the nuclear pore connection
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
Positions of potential: nuclear organization and gene expression.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
Regulatory mutations of inositol biosynthesis in yeast: isolation of inositol-excreting mutants
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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29 September 2017
A physiological role for gene loops in yeast.
1 reference
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PubMed Central
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2 June 2018
Transcriptional memory: staying in the loop
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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27 November 2018
Transcriptional repression mediated by repositioning of genes to the nuclear lamina.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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27 November 2018
A yeast catabolic enzyme controls transcriptional memory.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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27 November 2018
SWI/SNF is required for transcriptional memory at the yeast GAL gene cluster
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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27 November 2018
Dynamics of Replication-Independent Histone Turnover in Budding Yeast
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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27 November 2018
Nup-PI: the nucleopore-promoter interaction of genes in yeast.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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27 November 2018
Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953765
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27 November 2018
Quantitative localization of chromosomal loci by immunofluorescence
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20932479
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Nuclear organization and silencing: putting things in their place
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20932479
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Conserved Histone Variant H2A.Z Protects Euchromatin from the Ectopic Spread of Silent Heterochromatin
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20932479
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Nuclear pore association confers optimal expression levels for an inducible yeast gene
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20932479
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Actively transcribed GAL genes can be physically linked to the nuclear pore by the SAGA chromatin modifying complex
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20932479
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.MOLCEL.2010.09.007
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
566202
OpenCitations bibliographic resource ID
566202
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
566202
PMCID
2953765
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
566202
PubMed ID
20932479
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
566202
ResearchGate publication ID
47381703
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