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Dissecting the mechanisms of the clock in Neurospora
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title
Dissecting the mechanisms of the clock in Neurospora
(English)
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author name string
Jennifer Hurley
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1
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Jennifer J. Loros
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2
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Jay C. Dunlap
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3
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language of work or name
English
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PubMed
publication date
2015
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published in
Methods in Enzymology
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PubMed
volume
551
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PubMed
page(s)
29-52
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PubMed
cites work
Neurospora WC-1 recruits SWI/SNF to remodel frequency and initiate a circadian cycle
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RNA degradation by the exosome is promoted by a nuclear polyadenylation complex
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20 March 2017
Regulation of the Neurospora circadian clock by an RNA helicase
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PubMed Central
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20 March 2017
The genome sequence of the filamentous fungus Neurospora crassa
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PubMed Central
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20 March 2017
Phosphorylation of the Neurospora clock protein FREQUENCY determines its degradation rate and strongly influences the period length of the circadian clock
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PubMed Central
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20 March 2017
Circadian Nature of a Rhythm Expressed by an Invertaseless Strain of Neurospora crassa
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20 March 2017
Molecular bases for circadian clocks
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Circadian rhythms. Decoupling circadian clock protein turnover from circadian period determination
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29 September 2017
Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential.
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29 September 2017
Circadian rhythms synchronize mitosis in Neurospora crassa
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29 September 2017
Assessing the effects of light on differentiation and virulence of the plant pathogen Botrytis cinerea: characterization of the White Collar Complex
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29 September 2017
Conserved RNA helicase FRH acts nonenzymatically to support the intrinsically disordered neurospora clock protein FRQ.
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PubMed Central
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The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution
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29 September 2017
The Ccr4-not protein complex regulates the phase of the Neurospora circadian clock by controlling white collar protein stability and activity
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PubMed Central
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29 September 2017
High-resolution spatiotemporal analysis of gene expression in real time: in vivo analysis of circadian rhythms in Neurospora crassa using a FREQUENCY-luciferase translational reporter
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PubMed Central
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29 September 2017
The Neurospora crassa OS MAPK pathway-activated transcription factor ASL-1 contributes to circadian rhythms in pathway responsive clock-controlled genes
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PubMed Central
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29 September 2017
Direct transcriptional control of a p38 MAPK pathway by the circadian clock in Neurospora crassa
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PubMed Central
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29 September 2017
CHD1 remodels chromatin and influences transient DNA methylation at the clock gene frequency.
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29 September 2017
The circadian clock of Neurospora crassa
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PubMed Central
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29 September 2017
Phosphorylations: Making the Neurosporacrassa circadian clock tick
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PubMed Central
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29 September 2017
Regulation of the activity and cellular localization of the circadian clock protein FRQ.
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PubMed Central
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29 September 2017
JTK_CYCLE: an efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets
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29 September 2017
VIVID interacts with the WHITE COLLAR complex and FREQUENCY-interacting RNA helicase to alter light and clock responses in Neurospora
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PubMed Central
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29 September 2017
The diversity and evolution of circadian clock proteins in fungi
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29 September 2017
High-throughput construction of gene deletion cassettes for generation of Neurospora crassa knockout strains
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29 September 2017
Functional significance of FRH in regulating the phosphorylation and stability of Neurospora circadian clock protein FRQ
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PubMed Central
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29 September 2017
FRQ-interacting RNA helicase mediates negative and positive feedback in the Neurospora circadian clock
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PubMed Central
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29 September 2017
Phosphorylation modulates rapid nucleocytoplasmic shuttling and cytoplasmic accumulation of Neurospora clock protein FRQ on a circadian time scale.
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PubMed Central
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29 September 2017
The exosome regulates circadian gene expression in a posttranscriptional negative feedback loop
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29 September 2017
Setting the pace of the Neurospora circadian clock by multiple independent FRQ phosphorylation events
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29 September 2017
Quantitative proteomics reveals a dynamic interactome and phase-specific phosphorylation in the Neurospora circadian clock
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29 September 2017
A role for casein kinase 2 in the mechanism underlying circadian temperature compensation
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29 September 2017
Activity of the circadian transcription factor White Collar Complex is modulated by phosphorylation of SP-motifs
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PubMed Central
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29 September 2017
Genome-wide analysis of light-inducible responses reveals hierarchical light signalling in Neurospora
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Closing the circadian negative feedback loop: FRQ-dependent clearance of WC-1 from the nucleus
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29 September 2017
Systems biology of the clock in Neurospora crassa
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29 September 2017
Interlocked feedback loops of the circadian clock of Neurospora crassa.
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29 September 2017
Long and short isoforms of Neurospora clock protein FRQ support temperature-compensated circadian rhythms
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29 September 2017
Fully codon-optimized luciferase uncovers novel temperature characteristics of the Neurospora clock
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29 September 2017
The band mutation in Neurospora crassa is a dominant allele of ras-1 implicating RAS signaling in circadian output
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29 September 2017
The Neurospora crassa circadian clock
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29 September 2017
How fungi keep time: circadian system in Neurospora and other fungi
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29 September 2017
CKI and CKII mediate the FREQUENCY-dependent phosphorylation of the WHITE COLLAR complex to close the Neurospora circadian negative feedback loop
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29 September 2017
Circadian rhythms in Neurospora crassa and other filamentous fungi
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29 September 2017
A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors
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29 September 2017
The relationship between FRQ-protein stability and temperature compensation in the Neurospora circadian clock
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29 September 2017
Fungal adenylyl cyclase integrates CO2 sensing with cAMP signaling and virulence
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29 September 2017
The PAS/LOV protein VIVID supports a rapidly dampened daytime oscillator that facilitates entrainment of the Neurospora circadian clock
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PubMed Central
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29 September 2017
Temperature-modulated alternative splicing and promoter use in the Circadian clock gene frequency
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29 September 2017
Molecular mechanism of temperature sensing by the circadian clock of Neurospora crassa
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29 September 2017
The neurospora circadian system
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PubMed Central
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29 September 2017
Highly efficient gene replacements in Neurospora strains deficient for nonhomologous end-joining
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29 September 2017
Photoreception in Neurospora : a tale of two White Collar proteins
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29 September 2017
FWD1-mediated degradation of FREQUENCY in Neurospora establishes a conserved mechanism for circadian clock regulation
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PubMed Central
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29 September 2017
Rhythmic binding of a WHITE COLLAR-containing complex to the frequency promoter is inhibited by FREQUENCY
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PubMed Central
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29 September 2017
A circadian oscillator in Aspergillus spp. regulates daily development and gene expression
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29 September 2017
White Collar-1, a circadian blue light photoreceptor, binding to the frequency promoter
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PubMed Central
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29 September 2017
Circadian programs of transcriptional activation, signaling, and protein turnover revealed by microarray analysis of mammalian cells
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29 September 2017
Light and clock expression of the Neurospora clock gene frequency is differentially driven by but dependent on WHITE COLLAR-2.
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PubMed Central
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29 September 2017
PAS domain-mediated WC-1/WC-2 interaction is essential for maintaining the steady-state level of WC-1 and the function of both proteins in circadian clock and light responses of Neurospora
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PubMed Central
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29 September 2017
The PAS protein VIVID defines a clock-associated feedback loop that represses light input, modulates gating, and regulates clock resetting
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29 September 2017
Analysis of expressed sequence tags from two starvation, time-of-day-specific libraries of Neurospora crassa reveals novel clock-controlled genes
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29 September 2017
Coiled-coil domain-mediated FRQ-FRQ interaction is essential for its circadian clock function in Neurospora
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PubMed Central
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29 September 2017
Thermally regulated translational control of FRQ mediates aspects of temperature responses in the neurospora circadian clock
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PubMed Central
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29 September 2017
Alternative initiation of translation and time-specific phosphorylation yield multiple forms of the essential clock protein FREQUENCY.
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PubMed Central
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29 September 2017
Neurospora wc-1 and wc-2: transcription, photoresponses, and the origins of circadian rhythmicity
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29 September 2017
Dissection of a circadian oscillation into discrete domains
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PubMed Central
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29 September 2017
White collar 2, a partner in blue-light signal transduction, controlling expression of light-regulated genes in Neurospora crassa
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PubMed Central
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29 September 2017
Circadian clock-controlled genes isolated from Neurospora crassa are late night- to early morning-specific
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PubMed Central
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29 September 2017
Distinct cis-acting elements mediate clock, light, and developmental regulation of the Neurospora crassa eas (ccg-2) gene
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351707
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29 September 2017
Negative feedback defining a circadian clock: autoregulation of the clock gene frequency
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PubMed Central
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29 September 2017
The frq locus in Neurospora crassa: a key element in circadian clock organization
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PubMed Central
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29 September 2017
Molecular cloning of genes under control of the circadian clock in Neurospora
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29 September 2017
The Neurospora clock gene frequency shares a sequence element with the Drosophila clock gene period
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29 September 2017
Circadian activation of the mitogen-activated protein kinase MAK-1 facilitates rhythms in clock-controlled genes in Neurospora crassa
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2 June 2018
Metabolic compensation of the Neurospora clock by a glucose-dependent feedback of the circadian repressor CSP1 on the core oscillator
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351707
retrieved
2 June 2018
The PAS/LOV protein VIVID controls temperature compensation of circadian clock phase and development in Neurospora crassa
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351707
retrieved
2 June 2018
How temperature changes reset a circadian oscillator
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351707
retrieved
2 June 2018
Blue light regulation in Neurospora crassa
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351707
retrieved
2 June 2018
Loss of temperature compensation of circadian period length in the frq-9 mutant of Neurospora crassa
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351707
retrieved
2 June 2018
The RNA helicase FRH is an ATP-dependent regulator of CK1a in the circadian clock of Neurospora crassa.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351707
retrieved
27 November 2018
Circadian conformational change of the Neurospora clock protein FREQUENCY triggered by clustered hyperphosphorylation of a basic domain.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351707
retrieved
27 November 2018
Photoadaptation in Neurospora by Competitive Interaction of Activating and Inhibitory LOV Domains
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351707
retrieved
27 November 2018
Execution of the circadian negative feedback loop in Neurospora requires the ATP-dependent chromatin-remodeling enzyme CLOCKSWITCH.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351707
retrieved
27 November 2018
Assay and Characteristics of Circadian Rhythmicity in Liquid Cultures of Neurospora crassa
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351707
retrieved
27 November 2018
Analysis of circadian output rhythms of gene expression in Neurospora and mammalian cells in culture
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351707
retrieved
27 November 2018
Light-independent phosphorylation of WHITE COLLAR-1 regulates its function in the Neurospora circadian negative feedback loop.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351707
retrieved
27 November 2018
Circadian and light-induced expression of luciferase in Neurospora crassa
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351707
retrieved
27 November 2018
WHITE COLLAR-1, a multifunctional neurospora protein involved in the circadian feedback loops, light sensing, and transcription repression of wc-2.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351707
retrieved
27 November 2018
Timeline: Neurospora: a model of model microbes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351707
retrieved
27 November 2018
Resetting the sporulation rhythm in Pilobolus with short light flashes of high intensity
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25662450
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Automated recordings of bioluminescence with special reference to the analysis of circadian rhythms
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25662450
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Degradation of the Neurospora circadian clock protein FREQUENCY through the ubiquitin-proteasome pathway
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25662450
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Role for antisense RNA in regulating circadian clock function in Neurospora crassa
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25662450
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/BS.MIE.2014.10.009
0 references
PMC publication ID
4351707
1 reference
stated in
PubMed
PubMed publication ID
25662450
1 reference
stated in
PubMed
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