(Q28115912)

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Three-dimensional structural views of damaged-DNA recognition: T4 endonuclease V, E. coli Vsr protein, and human nucleotide excision repair factor XPA

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PubMed publication ID

4 January 2017

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Europe PubMed Central

Three-dimensional structural views of damaged-DNA recognition: T4 endonuclease V, E. coli Vsr protein, and human nucleotide excision repair factor XPA (English)

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PubMed publication ID

4 January 2017

Escherichia coli

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author name string

K. Morikawa

1

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PubMed publication ID

4 January 2017

M. Shirakawa

2

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PubMed publication ID

4 January 2017

language of work or name

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publication date

30 August 2000

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PubMed publication ID

4 January 2017

Mutation Research

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PubMed publication ID

4 January 2017

460

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PubMed publication ID

4 January 2017

3-4

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PubMed publication ID

4 January 2017

257–275

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PubMed publication ID

4 January 2017

Structure-function studies of the T4 endonuclease V repair enzyme

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Preliminary crystallographic study of pyrimidine dimer-specific excision-repair enzyme from bacteriophage T4.

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

X-ray structure of T4 endonuclease V: an excision repair enzyme specific for a pyrimidine dimer

1 reference

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7 January 2021

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Crystal structure of a pyrimidine dimer-specific excision repair enzyme from bacteriophage T4: refinement at 1.45 A and X-ray analysis of the three active site mutants

1 reference

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7 January 2021

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Role of the basic amino acid cluster and Glu-23 in pyrimidine dimer glycosylase activity of T4 endonuclease V

1 reference

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7 January 2021

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Chlorella virus PBCV-1 encodes a homolog of the bacteriophage T4 UV damage repair gene denV

1 reference

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UV endonuclease of Micrococcus luteus, a cyclobutane pyrimidine dimer-DNA glycosylase/abasic lyase: cloning and characterization of the gene

1 reference

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7 January 2021

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Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition

1 reference

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7 January 2021

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DNA-repair enzymes

1 reference

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7 January 2021

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Conformational changes in the oligonucleotide duplex d(GCGTTGCG) x d(CGCAACGC) induced by formation of a cis-syn thymine dimer. A two-dimensional NMR study

1 reference

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1H NMR study of the exchangeable protons of the duplex d(GCGTTGCG).d(CGCAACGC) containing a thymine photodimer

1 reference

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7 January 2021

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Nuclear magnetic resonance study of the interaction of T4 endonuclease V with DNA.

1 reference

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7 January 2021

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The interaction of T4 endonuclease V E23Q mutant with thymine dimer- and tetrahydrofuran-containing DNA

1 reference

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DNA bending by EcoRI DNA methyltransferase accelerates base flipping but compromises specificity

1 reference

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7 January 2021

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Evidence for an imino intermediate in the T4 endonuclease V reaction

1 reference

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inferred from DOI database lookup

1 reference

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7 January 2021

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A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA

1 reference

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7 January 2021

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Structure of a DNA base-excision product resembling a cisplatin inter-strand adduct

1 reference

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7 January 2021

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MutY catalytic core, mutant and bound adenine structures define specificity for DNA repair enzyme superfamily

1 reference

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7 January 2021

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Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA.

1 reference

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7 January 2021

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A gene required for very short patch repair in Escherichia coli is adjacent to the DNA cytosine methylase gene

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

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inferred from DOI database lookup

Substrate preferences of Vsr DNA mismatch endonuclease and their consequences for the evolution of the Escherichia coli K-12 genome.

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

The vsr gene product of E. coli K-12 is a strand- and sequence-specific DNA mismatch endonuclease

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

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Very short patch repair: reducing the cost of cytosine methylation

1 reference

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7 January 2021

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Genetic requirements for hyper-recombination by very short patch mismatch repair: involvement of Escherichia coli DNA polymerase I.

1 reference

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Specific mismatch correction in bacteriophage lambda crosses by very short patch repair

1 reference

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7 January 2021

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Mismatch repair of deaminated 5-methyl-cytosine.

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

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Bacterial genes mutL, mutS, and dcm participate in repair of mismatches at 5-methylcytosine sites

1 reference

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7 January 2021

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The Escherichia coli MutL protein stimulates binding of Vsr and MutS to heteroduplex DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

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Crystallographic and functional studies of very short patch repair endonuclease

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

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DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI

1 reference

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7 January 2021

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Recognition and cleavage of DNA by type-II restriction endonucleases

1 reference

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7 January 2021

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Structure of the multimodular endonuclease FokI bound to DNA

1 reference

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Recognition of a TG mismatch: the crystal structure of very short patch repair endonuclease in complex with a DNA duplex

1 reference

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Intercalation, DNA kinking, and the control of transcription.

1 reference

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Co-crystal structure of TBP recognizing the minor groove of a TATA element

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Crystal structure of a yeast TBP/TATA-box complex

1 reference

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Molecular basis of human 46X,Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex

1 reference

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Basis for recognition of cisplatin-modified DNA by high-mobility-group proteins

1 reference

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Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn

1 reference

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7 January 2021

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Structural basis for the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I: a two metal ion mechanism

1 reference

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7 January 2021

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The active site of Serratia endonuclease contains a conserved magnesium-water cluster

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

Crystal structure of restriction endonuclease BglI bound to its interrupted DNA recognition sequence

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

Proposal for new catalytic roles for two invariant residues in Escherichia coli ribonuclease HI

1 reference

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7 January 2021

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Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

DNA excision repair

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

DNA repair in eukaryotes

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

Mammalian DNA nucleotide excision repair reconstituted with purified protein components.

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Reaction mechanism of human DNA repair excision nuclease

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Assembly, subunit composition, and footprint of human DNA repair excision nuclease

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Protein complexes in nucleotide excision repair

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

Analysis of a human DNA excision repair gene involved in group A xeroderma pigmentosum and containing a zinc-finger domain

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Preferential binding of the xeroderma pigmentosum group A complementing protein to damaged DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

The XPA protein is a zinc metalloprotein with an ability to recognize various kinds of DNA damage

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Identification of a damaged-DNA binding domain of the XPA protein

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Mutational analysis of a function of xeroderma pigmentosum group A (XPA) protein in strand-specific DNA repair

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

RPA involvement in the damage-recognition and incision steps of nucleotide excision repair

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

An interaction between the DNA repair factor XPA and replication protein A appears essential for nucleotide excision repair

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Sequential binding of DNA repair proteins RPA and ERCC1 to XPA in vitro

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

The general transcription-repair factor TFIIH is recruited to the excision repair complex by the XPA protein independent of the TFIIE transcription factor

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

DNA damage recognition by XPA protein promotes efficient recruitment of transcription factor II H.

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Specific association between the human DNA repair proteins XPA and ERCC1

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Mutations in XPA that prevent association with ERCC1 are defective in nucleotide excision repair

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Enhancement of damage-specific DNA binding of XPA by interaction with the ERCC1 DNA repair protein

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Human replication protein A preferentially binds cisplatin-damaged duplex DNA in vitro

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Photocrosslinking locates a binding site for the large subunit of human replication protein A to the damaged strand of cisplatin-modified DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Overproduction, purification, and characterization of the XPC subunit of the human DNA repair excision nuclease

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Xeroderma pigmentosum group C protein complex is the initiator of global genome nucleotide excision repair

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Order of assembly of human DNA repair excision nuclease

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

DNA damage recognition during nucleotide excision repair in mammalian cells

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Human nucleotide excision repair protein XPA: extended X-ray absorption fine-structure evidence for a metal-binding domain

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Implications of the zinc-finger motif found in the DNA-binding domain of the human XPA protein

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Solution structure of the DNA- and RPA-binding domain of the human repair factor XPA

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Resonance assignments, solution structure, and backbone dynamics of the DNA- and RPA-binding domain of human repair factor XPA.

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Interactions of human nucleotide excision repair protein XPA with DNA and RPA70 Delta C327: chemical shift mapping and 15N NMR relaxation studies

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Proposed structure for the zinc-binding domains from transcription factor IIIA and related proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Solution structure of the activator contact domain of the RNA polymerase alpha subunit

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

C-terminal binding domain of Rho GDP-dissociation inhibitor directs N-terminal inhibitory peptide to GTPases

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

The C-terminal domain of TolA is the coreceptor for filamentous phage infection of E. coli.

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Yeast DNA repair protein RAD23 promotes complex formation between transcription factor TFIIH and DNA damage recognition factor RAD14

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Functional analysis of human replication protein A in nucleotide excision repair

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Replication protein A interactions with DNA. 1. Functions of the DNA-binding and zinc-finger domains of the 70-kDa subunit

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Replication protein A. Characterization and crystallization of the DNA binding domain.

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Recognition of DNA adducts by human nucleotide excision repair. Evidence for a thermodynamic probing mechanism

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Raster3D: photorealistic molecular graphics

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

MOLMOL: a program for display and analysis of macromolecular structures

1 reference

https://api.crossref.org/works/10.1016%2FS0921-8777%2800%2900031-8

7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

10.1016/S0921-8777(00)00031-8

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PubMed publication ID

1 reference

PubMed publication ID

4 January 2017

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