(Q28208662)

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Cis-acting regulatory elements in the potato virus X 3' non-translated region differentially affect minus-strand and plus-strand RNA accumulation

scientific article (publication date: 21 February 2003)

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scholarly article

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Cis-acting regulatory elements in the potato virus X 3' non-translated region differentially affect minus-strand and plus-strand RNA accumulation (English)

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author name string

Neeta Pillai-Nair

1

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Kook Hyung Kim

2

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Cynthia Hemenway

3

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language of work or name

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publication date

21 February 2003

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Journal of Molecular Biology

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326

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3

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701-20

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describes a project that uses

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Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC7126608/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

FUNCTIONS OF THE 3'-UNTRANSLATED REGIONS OF POSITIVE STRAND RNA VIRAL GENOMES.

1 reference

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Manipulating plant viral RNA transcription signals.

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5' cloverleaf in poliovirus RNA is a cis-acting replication element required for negative-strand synthesis

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A long-range pseudoknot in Qbeta RNA is essential for replication

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7 January 2021

The 3' untranslated region of satellite tobacco necrosis virus RNA stimulates translation in vitro

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7 January 2021

The 3'-untranslated region of alfalfa mosaic virus RNA 3 contains at least two independent binding sites for viral coat protein

1 reference

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7 January 2021

A sequence located 4.5 to 5 kilobases from the 5' end of the barley yellow dwarf virus (PAV) genome strongly stimulates translation of uncapped mRNA.

1 reference

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7 January 2021

A tale of two termini: a functional interaction between the termini of an mRNA is a prerequisite for efficient translation initiation

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7 January 2021

A primary determinant of cap-independent translation is located in the 3'-proximal region of the tomato bushy stunt virus genome.

1 reference

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7 January 2021

Picornavirus IRESes and the poly(A) tail jointly promote cap-independent translation in a mammalian cell-free system

1 reference

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7 January 2021

cis-acting sequences required for coronavirus infectious bronchitis virus defective-RNA replication and packaging.

1 reference

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7 January 2021

Minus-strand initiation by brome mosaic virus replicase within the 3' tRNA-like structure of native and modified RNA templates

1 reference

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7 January 2021

Mutational analysis of the sequence and structural requirements in brome mosaic virus RNA for minus strand promoter activity

1 reference

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7 January 2021

A minimal RNA promoter for minus-strand RNA synthesis by the brome mosaic virus polymerase complex

1 reference

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7 January 2021

Recognition of the core RNA promoter for minus-strand RNA synthesis by the replicases of Brome mosaic virus and Cucumber mosaic virus

1 reference

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7 January 2021

Replication of tobacco mosaic virus RNA

1 reference

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7 January 2021

CCA initiation boxes without unique promoter elements support in vitro transcription by three viral RNA-dependent RNA polymerases

1 reference

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7 January 2021

Deletion analysis of cis- and trans-acting elements involved in replication of alfalfa mosaic virus RNA 3 in Vivo

1 reference

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7 January 2021

The 3' untranslated region of alfalfa mosaic virus RNA3 contains a core promoter for minus-strand RNA synthesis and an enhancer element

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Analysis of cis-acting elements required for replication of barley stripe mosaic virus RNAs

1 reference

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7 January 2021

3' Terminal putative stem-loop structure required for the accumulation of cymbidium ringspot viral RNA

1 reference

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7 January 2021

Mutational analysis of cis-acting sequences in the 3'- and 5'-untranslated regions of RNA2 of red clover necrotic mosaic virus

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Requirement of a 3'-terminal stem-loop in in vitro transcription by an RNA-dependent RNA polymerase

1 reference

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7 January 2021

Analysis of sequences and predicted structures required for viral satellite RNA accumulation by in vivo genetic selection

1 reference

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7 January 2021

Multiplication of beet necrotic yellow vein virus RNA 3 lacking a 3' poly(A) tail is accompanied by reappearance of the poly(A) tail and a novel short U-rich tract preceding it.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Conformation of the 3'-end of beet necrotic yellow vein benevirus RNA 3 analysed by chemical and enzymatic probing and mutagenesis

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Restoration of the 3' end of potyvirus RNA derived from Poly(A)-deficient infectious cDNA clones

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Analysis of sequences involved in cowpea mosaic virus RNA replication using site-specific mutants

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Specificity analysis of the conserved hexanucleotides for the replication of bamboo mosaic potexvirus RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Structural and functional analysis of the 3' untranslated region of bamboo mosaic potexvirus genomic RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Sufficient length of a poly(A) tail for the formation of a potential pseudoknot is required for efficient replication of bamboo mosaic potexvirus RNA.

2 references

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

https://pubmed.ncbi.nlm.nih.gov/12581634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutagenesis of a hexanucleotide sequence conserved in potexvirus RNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Influence of the poly(A) tail and putative polyadenylation signal on the infectivity of white clover mosaic potexvirus

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

The Complete Nucleotide Sequence of Potato Virus X and Its Homologies at the Amino Acid Level with Various Plus-stranded RNA Viruses

1 reference

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7 January 2021

The nucleotide sequence of potato virus X RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Cell-to-cell movement of potato virus X is associated with a change in the size-exclusion limit of plasmodesmata in trichome cells of Nicotiana clevelandii

1 reference

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7 January 2021

Cell-to-cell movement of Potato virus X: the role of p12 and p8 encoded by the second and third open reading frames of the triple gene block

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Cell-to-cell and phloem-mediated transport of potato virus X. The role of virions

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Assembly and movement of a plant virus carrying a green fluorescent protein overcoat

1 reference

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7 January 2021

Jellyfish green fluorescent protein as a reporter for virus infections

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Stem-loop structure in the 5' region of potato virus X genome required for plus-strand RNA accumulation

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Long-distance RNA-RNA interactions and conserved sequence elements affect potato virus X plus-strand RNA accumulation

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

The entire nucleotide sequence of foxtail mosaic virus RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Sequences at the 3' untranslated region of bamboo mosaic potexvirus RNA interact with the viral RNA-dependent RNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

A conserved motif at the 3' end of mouse hepatitis virus genomic RNA required for host protein binding and viral RNA replication

1 reference

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7 January 2021

Full-length tobacco mosaic virus RNAs and defective RNAs have different 3' replication signals

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Turnip yellow mosaic virus RNA-dependent RNA polymerase: initiation of minus strand synthesis in vitro

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Plant mRNA 3'-end formation

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Analysis of figwort mosaic virus (plant pararetrovirus) polyadenylation signal.

1 reference

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7 January 2021

Poly(A) addition during maturation of frog oocytes: distinct nuclear and cytoplasmic activities and regulation by the sequence UUUUUAU.

1 reference

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7 January 2021

The ability of the HIV-1 AAUAAA signal to bind polyadenylation factors is controlled by local RNA structure

1 reference

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7 January 2021

The synthesis of minus-strand RNA of bamboo mosaic potexvirus initiates from multiple sites within the poly(A) tail

1 reference

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7 January 2021

Host protein interactions with the 3' end of bovine coronavirus RNA and the requirement of the poly(A) tail for coronavirus defective genome replication

1 reference

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7 January 2021

RNA pseudoknot domain of tobacco mosaic virus can functionally substitute for a poly(A) tail in plant and animal cells

1 reference

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7 January 2021

A phylogenetically conserved sequence within viral 3' untranslated RNA pseudoknots regulates translation

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

The role of the 3'-untranslated region of non-polyadenylated plant viral mRNAs in regulating translational efficiency

1 reference

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7 January 2021

The tobacco etch viral 5' leader and poly(A) tail are functionally synergistic regulators of translation

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Identification of a competitive translation determinant in the 3' untranslated region of alfalfa mosaic virus coat protein mRNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

A potential mechanism for selective control of cap-independent translation by a viral RNA sequence in cis and in trans

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Structure and function of a cap-independent translation element that functions in either the 3' or the 5' untranslated region

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Base-pairing between untranslated regions facilitates translation of uncapped, nonpolyadenylated viral RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Translation of a nonpolyadenylated viral RNA is enhanced by binding of viral coat protein or polyadenylation of the RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Characterization of infectious transcripts from a potato virus X cDNA clone

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Rapid and efficient site-specific mutagenesis without phenotypic selection

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Prediction of RNA secondary structure, including pseudoknotting, by computer simulation

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

The computer simulation of RNA folding involving pseudoknot formation

1 reference

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7 January 2021

An APL-programmed genetic algorithm for the prediction of RNA secondary structure

1 reference

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7 January 2021

Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension

1 reference

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7 January 2021

Nucleotide sequence of the genomic RNA of bamboo mosaic potexvirus

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901369-4

7 January 2021

Characterization of cymbidium mosaic virus coat protein gene and its expression in transgenic tobacco plants

1 reference

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7 January 2021

Complete nucleotide sequence of clover yellow mosaic virus RNA.

1 reference

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7 January 2021

Nucleotide sequence of narcissus mosaic virus RNA.

1 reference

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7 January 2021

The entire nucleotide sequence and genomic organization of potato aucuba mosaic potexvirus

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1 reference

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7 January 2021

The nucleotide sequence and genome organization of strawberry mild yellow edge-associated potexvirus

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7 January 2021

The complete nucleotide sequence of the potexvirus white clover mosaic virus

1 reference

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7 January 2021

The turnip yellow mosaic virus tRNA-like structure cannot be replaced by generic tRNA-like elements or by heterologous 3' untranslated regions known to enhance mRNA expression and stability.

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

Specific cessation of minus-strand RNA accumulation at an early stage of tobacco mosaic virus infection

1 reference

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7 January 2021

based on heuristic

inferred from DOI database lookup

Potato virus X: a model system for virus replication, movement and gene expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/12581634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of the cis-acting signal for minus-strand RNA synthesis of a murine coronavirus: implications for the role of minus-strand RNA in RNA replication and transcription

1 reference

https://pubmed.ncbi.nlm.nih.gov/12581634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An eight-nucleotide sequence in the potato virus X 3' untranslated region is required for both host protein binding and viral multiplication

1 reference

https://pubmed.ncbi.nlm.nih.gov/12581634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The contribution of AAUAAA and the upstream element UUUGUA to the efficiency of mRNA 3'-end formation in plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/12581634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The 5' and 3' untranslated regions of satellite tobacco necrosis virus RNA affect translational efficiency and dependence on a 5' cap structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/12581634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutagenesis of the 3' nontranslated region of Sindbis virus RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/12581634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparison of the replication of positive-stranded RNA viruses of plants and animals

1 reference

https://pubmed.ncbi.nlm.nih.gov/12581634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The 5' nontranslated region of potato virus X RNA affects both genomic and subgenomic RNA synthesis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/12581634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The role of the pseudoknot at the 3' end of turnip yellow mosaic virus RNA in minus-strand synthesis by the viral RNA-dependent RNA polymerase

1 reference

https://pubmed.ncbi.nlm.nih.gov/12581634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1016/S0022-2836(02)01369-4

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24 November 2022

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