(Q28247648)

1

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Katarzyna Bebenek

2

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Joseph M Krahn

3

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Luis Blanco

4

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Thomas A Kunkel

5

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Lars C Pedersen

DNA polymerase beta-like nucleotidyltransferase superfamily: identification of three new families, classification and evolutionary history

6

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language of work or name

English

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publication date

27 February 2004

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published in

Molecular Cell

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volume

13

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page(s)

561-72

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issue

4

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cites work

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Structural design of a eukaryotic DNA repair polymerase: DNA polymerase beta.

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DNA lesion bypass polymerases open up.

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Efficiency of correct nucleotide insertion governs DNA polymerase fidelity.

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The frameshift infidelity of human DNA polymerase lambda. Implications for function.

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Compilation, alignment, and phylogenetic relationships of DNA polymerases

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

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Crystal structures of a template-independent DNA polymerase: murine terminal deoxynucleotidyltransferase

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Solution structure of the lyase domain of human DNA polymerase lambda

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Mapping of the 5'-2-deoxyribose-5-phosphate lyase active site in DNA polymerase beta by mass spectrometry

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The helix-hairpin-helix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA.

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Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution

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Structure of the replicating complex of a pol alpha family DNA polymerase

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DNA polymerase lambda (Pol lambda), a novel eukaryotic DNA polymerase with a potential role in meiosis

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Identification of an intrinsic 5'-deoxyribose-5-phosphate lyase activity in human DNA polymerase lambda: a possible role in base excision repair

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DNA polymerase lambda, a novel DNA repair enzyme in human cells.

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Mapping of the interaction interface of DNA polymerase beta with XRCC1.

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Compilation and alignment of DNA polymerase sequences

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Improved methods for building protein models in electron density maps and the location of errors in these models

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Crystal structure at 3.5 A resolution of HIV-1 reverse transcriptase complexed with an inhibitor

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MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

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Functions of human DNA polymerases eta, kappa and iota suggested by their properties, including fidelity with undamaged DNA templates.

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Implication of DNA polymerase lambda in alignment-based gap filling for nonhomologous DNA end joining in human nuclear extracts.

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Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.

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Mechanism and regulation of human non-homologous DNA end-joining

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Solution structure of a viral DNA repair polymerase

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Catalytic Center of DNA Polymerase β for Excision of Deoxyribose Phosphate Groups†

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Raster3D: photorealistic molecular graphics

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Crystal structures of active and inactive conformations of a caliciviral RNA-dependent RNA polymerase

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Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

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7 January 2021

Polymerase mu is a DNA-directed DNA/RNA polymerase

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7 January 2021

The Y-family of DNA polymerases

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Characterization of an African swine fever virus 20-kDa DNA polymerase involved in DNA repair

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Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP

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Base substitution specificity of DNA polymerase beta depends on interactions in the DNA minor groove

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7 January 2021

Processing of X-ray diffraction data collected in oscillation mode

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7 January 2021

Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis

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7 January 2021

Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP

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7 January 2021

Crystal structures of human DNA polymerase beta complexed with DNA: implications for catalytic mechanism, processivity, and fidelity

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7 January 2021

Functional analysis of the amino-terminal 8-kDa domain of DNA polymerase beta as revealed by site-directed mutagenesis. DNA binding and 5'-deoxyribose phosphate lyase activities

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7 January 2021

Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism

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7 January 2021

Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism

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7 January 2021

Solution structure of a viral DNA polymerase X and evidence for a mutagenic function

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7 January 2021

Crystal structure of bacteriophage T7 RNA polymerase at 3.3 A resolution

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7 January 2021

DNA polymerases: structural diversity and common mechanisms

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7 January 2021

Nuclear DNA polymerase beta from Leishmania infantum. Cloning, molecular analysis and developmental regulation

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7 January 2021

MOLREP: an Automated Program for Molecular Replacement

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7 January 2021

Regulation and mechanisms of mammalian double-strand break repair

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7 January 2021

DNA structure and aspartate 276 influence nucleotide binding to human DNA polymerase beta. Implication for the identity of the rate-limiting conformational change

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7 January 2021

Yeast DNA polymerase eta utilizes an induced-fit mechanism of nucleotide incorporation

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7 January 2021

Efficient processing of DNA ends during yeast nonhomologous end joining. Evidence for a DNA polymerase beta (Pol4)-dependent pathway

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7 January 2021