(Q28249248)

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Structural probing and mutagenic analysis of the stem-loop required for Escherichia coli dnaX ribosomal frameshifting: programmed efficiency of 50%

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6 November 2019

Structural probing and mutagenic analysis of the stem-loop required for Escherichia coli dnaX ribosomal frameshifting: programmed efficiency of 50% (English)

1 reference

Europe PubMed Central

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6 November 2019

Escherichia coli

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3

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6 November 2019

author name string

Larsen B

1

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6 November 2019

Gesteland RF

2

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6 November 2019

language of work or name

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publication date

1 August 1997

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6 November 2019

Journal of Molecular Biology

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6 November 2019

271

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6 November 2019

47-60

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6 November 2019

1

1 reference

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6 November 2019

The sequences of and distance between two cis-acting signals determine the efficiency of ribosomal frameshifting in human immunodeficiency virus type 1 and human T-cell leukemia virus type II in vivo

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pb(II)-catalysed cleavage of the sugar–phosphate backbone of yeast tRNAPhe—implications for lead toxicity and self-splicing RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

rRNA-mRNA base pairing stimulates a programmed -1 ribosomal frameshift

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural and functional studies of retroviral RNA pseudoknots involved in ribosomal frameshifting: nucleotides at the junction of the two stems are important for efficient ribosomal frameshifting.

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: codon usage, map position, and concerted evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Use of lead(II) to probe the structure of large RNA's. Conformation of the 3' terminal domain of E. coli 16S rRNA and its involvement in building the tRNA binding sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chemical probes for higher-order structure in RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Autoregulatory frameshifting in decoding mammalian ornithine decarboxylase antizyme

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of the lead(II)-induced cleavages in tRNAs in solution and effect of the Y-base removal in yeast tRNAPhe

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Amelioration of bacterial genomes: rates of change and exchange

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Increased ribosomal accuracy increases a programmed translational frameshift in Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure of the autoregulatory pseudoknot within the gene 32 messenger RNA of bacteriophages T2 and T6: a model for a possible family of structurally related RNA pseudoknots

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An efficient ribosomal frame-shifting signal in the polymerase-encoding region of the coronavirus IBV.

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

E. coli ribosomes re-phase on retroviral frameshift signals at rates ranging from 2 to 50 percent

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Translational control in production of transposase and in transposition of insertion sequence IS3.

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determining divergence times of the major kingdoms of living organisms with a protein clock

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reading frame switch caused by base-pair formation between the 3' end of 16S rRNA and the mRNA during elongation of protein synthesis in Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Slippery runs, shifty stops, backward steps, and forward hops: -2, -1, +1, +2, +5, and +6 ribosomal frameshifting

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification and analysis of the pseudoknot-containing gag-pro ribosomal frameshift signal of simian retrovirus-1.

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The putative replicase of the cocksfoot mottle sobemovirus is translated as a part of the polyprotein by -1 ribosomal frameshift

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutational analysis of the "slippery-sequence" component of a coronavirus ribosomal frameshifting signal

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Translational frame shifting in theEscherichia colidnaX genein vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In vivo assembly of the tau-complex of the DNA polymerase III holoenzyme expressed from a five-gene artificial operon. Cleavage of the tau-complex to form a mixed gamma-tau-complex by the OmpT protease.

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Studies on the Sequence of the 3'-Terminal Region of Turnip-Yellow-Mosaic-Virus RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Solution structure of the 3'-end of brome mosaic virus genomic RNAs. Conformational mimicry with canonical tRNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression of peptide chain release factor 2 requires high-efficiency frameshift.

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A characteristic bent conformation of RNA pseudoknots promotes -1 frameshifting during translation of retroviral RNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of an efficient coronavirus ribosomal frameshifting signal: requirement for an RNA pseudoknot

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutational analysis of the RNA pseudoknot component of a coronavirus ribosomal frameshifting signal

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Translational frameshifting generates the gamma subunit of DNA polymerase III holoenzyme

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Programmed translational frameshifting and initiation at an AUU codon in gene expression of bacterial insertion sequence IS911

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recoding: dynamic reprogramming of translation.

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of ribosomal frameshifting for expression of pol gene products of human T-cell leukemia virus type I

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Autogenous suppression of an opal mutation in the gene encoding peptide chain release factor 2.

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rates of aminoacyl-tRNA selection at 29 sense codons in vivo.

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Human immunodeficiency virus type 1 gag-pol frameshifting is dependent on downstream mRNA secondary structure: demonstration by expression in vivo

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reading two bases twice: mammalian antizyme frameshifting in yeast.

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ribosomal frameshifting viral RNAs.

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Differential response to frameshift signals in eukaryotic and prokaryotic translational systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Specific cleavages of pure tRNAs by plumbous ions

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA structure prediction

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An RNA pseudoknot and an optimal heptameric shift site are required for highly efficient ribosomal frameshifting on a retroviral messenger RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification and analysis of the gag-pol ribosomal frameshift site of feline immunodeficiency virus

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The structure of an RNA pseudoknot that causes efficient frameshifting in mouse mammary tumor virus

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High-level ribosomal frameshifting directs the synthesis of IS150gene products

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On the recognition of helical RNA by cobra venom V1 nuclease.

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide sequence of the Escherichia coli replication gene dnaZX.

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Programmed ribosomal frameshifting generates the Escherichia coli DNA polymerase III gamma subunit from within the tau subunit reading frame

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete nucleotide sequence of a milk-transmitted mouse mammary tumor virus: two frameshift suppression events are required for translation of gag and pol.

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence requirements for efficient translational frameshifting in the Escherichia coli dnaX gene and the role of an unstable interaction between tRNA(Lys) and an AAG lysine codon

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cleavage of tRNA with imidazole and spermine imidazole constructs: a new approach for probing RNA structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conformation of a non-frameshifting RNA pseudoknot from mouse mammary tumor virus

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Two efficient ribosomal frameshifting events are required for synthesis of mouse mammary tumor virus gag-related polyproteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The gamma subunit of DNA polymerase III holoenzyme of Escherichia coli is produced by ribosomal frameshifting

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The human astrovirus RNA-dependent RNA polymerase coding region is expressed by ribosomal frameshifting

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Escherichia coli DNA polymerase III holoenzyme contains both products of the dnaX gene, tau and gamma, but only tau is essential.

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CUUCGG hairpins: extraordinarily stable RNA secondary structures associated with various biochemical processes

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Probing the structure of the Escherichia coli 10Sa RNA (tmRNA).

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparison of the tertiary structure of yeast tRNA(Asp) and tRNA(Phe) in solution. Chemical modification study of the bases

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1006/JMBI.1997.1162

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

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6 November 2019

release_tlbo2qod5rcsrbs3kzp5vueyoq

1 reference

https://api.fatcat.wiki/v0/release/tlbo2qod5rcsrbs3kzp5vueyoq

24 November 2022

based on heuristic

mapped directly with Wikidata item

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

0 references

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9300054%20AND%20SRC:MED&resulttype=core&format=json

6 November 2019

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