(Q28277465)

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Discriminative modelling of context-specific amino acid substitution probabilities

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title

Discriminative modelling of context-specific amino acid substitution probabilities (English)

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author

Johannes Söding

series ordinal

3

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author name string

Christof Angermüller

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1

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Andreas Biegert

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2

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language of work or name

English

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publication date

15 December 2012

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28

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issue

24

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page(s)

3240-7

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cites work

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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21 January 2018

Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins

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21 January 2018

Sequence context-specific profiles for homology searching

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reference URL

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21 January 2018

Context-specific amino acid substitution matrices and their use in the detection of protein homologs

1 reference

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reference URL

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retrieved

21 January 2018

Amino acid substitution matrices from protein blocks

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21 January 2018

Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions

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A mutation data matrix for transmembrane proteins

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Assessment of template based protein structure predictions in CASP9.

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21 January 2018

SCOP: a structural classification of proteins database for the investigation of sequences and structures

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reference URL

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Environment-specific amino acid substitution tables: tertiary templates and prediction of protein folds

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reference URL

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retrieved

21 January 2018

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

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21 January 2018

A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence

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reference URL

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retrieved

21 January 2018

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

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reference URL

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retrieved

21 January 2018

Protein homology detection by HMM-HMM comparison

1 reference

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Crossref

reference URL

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retrieved

21 January 2018

Protein sequence comparison and fold recognition: progress and good-practice benchmarking

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reference URL

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TM-align: a protein structure alignment algorithm based on the TM-score

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Identifiers

DOI

10.1093/BIOINFORMATICS/BTS622

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2051818

DBLP publication ID

journals/bioinformatics/AngermullerBS12

1 reference

stated in

DBLP Dataset 2021-01-02

retrieved

28 January 2021

OpenCitations bibliographic resource ID

2051818

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2051818

PubMed publication ID

23080114

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2051818

ResearchGate publication ID

232320536

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(Q28277465)

Discriminative modelling of context-specific amino acid substitution probabilities

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