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Sequence space, folding and protein design
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scholarly article
1 reference
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Europe PubMed Central
PubMed publication ID
8696970
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8696970%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 October 2019
review article
1 reference
stated in
Europe PubMed Central
title
Sequence space, folding and protein design
(English)
1 reference
stated in
Europe PubMed Central
PubMed publication ID
8696970
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8696970%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 October 2019
main subject
protein design
0 references
protein folding
0 references
author
Robert T Sauer
series ordinal
3
1 reference
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Europe PubMed Central
PubMed publication ID
8696970
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8696970%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 October 2019
author name string
M H Cordes
series ordinal
1
1 reference
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Europe PubMed Central
PubMed publication ID
8696970
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8696970%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 October 2019
A R Davidson
series ordinal
2
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Europe PubMed Central
PubMed publication ID
8696970
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8696970%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 October 2019
language of work or name
English
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publication date
1 February 1996
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Europe PubMed Central
PubMed publication ID
8696970
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8696970%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 October 2019
published in
Current Opinion in Structural Biology
1 reference
stated in
Europe PubMed Central
PubMed publication ID
8696970
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8696970%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 October 2019
volume
6
1 reference
stated in
Europe PubMed Central
PubMed publication ID
8696970
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8696970%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 October 2019
issue
1
1 reference
stated in
Europe PubMed Central
PubMed publication ID
8696970
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8696970%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 October 2019
page(s)
3-10
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Europe PubMed Central
PubMed publication ID
8696970
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8696970%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 October 2019
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A de Novo Designed Protein Mimics the Native State of Natural Proteins
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A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure
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Genetic studies of the lac repressor. XIV. Analysis of 4000 altered Escherichia coli lac repressors reveals essential and non-essential residues, as well as "spacers" which do not require a specific sequence.
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Toward a simplification of the protein folding problem: a stabilizing polyalanine alpha-helix engineered in T4 lysozyme
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Metal binding and folding properties of a minimalist Cys2His2 zinc finger peptide
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Design of a "minimAl" homeodomain: the N-terminal arm modulates DNA binding affinity and stabilizes homeodomain structure
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Sequence ‘minimization’: exploring the sequence landscape with simplified sequences
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Folded proteins occur frequently in libraries of random amino acid sequences
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Cooperatively folded proteins in random sequence libraries
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A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids
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Side chain contributions to the stability of alpha-helical structure in peptides
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Alpha-helix stability in proteins. II. Factors that influence stability at an internal position
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Thermodynamic beta-sheet propensities measured using a zinc-finger host peptide.
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Context is a major determinant of β-sheet propensity
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A thermodynamic scale for the beta-sheet forming tendencies of the amino acids.
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Measurement of the β-sheet-forming propensities of amino acids
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Elucidating the folding problem of helical peptides using empirical parameters.
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7 January 2021
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Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980088-1
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7 January 2021
based on heuristic
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Side-Chain Determinants of .beta.-Sheet Stability
1 reference
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Crossref
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7 January 2021
based on heuristic
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Intrinsic secondary structure propensities of the amino acids, using statistical phi-psi matrices: comparison with experimental scales.
1 reference
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Crossref
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7 January 2021
based on heuristic
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Intrinsic phi, psi propensities of amino acids, derived from the coil regions of known structures
1 reference
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
Alpha-helix-forming propensities in peptides and proteins
1 reference
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Crossref
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7 January 2021
based on heuristic
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Hydrogen bond strength and beta-sheet propensities: the role of a side chain blocking effect
1 reference
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7 January 2021
based on heuristic
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Interactions between hydrophobic side chains within alpha-helices
1 reference
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Crossref
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7 January 2021
based on heuristic
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Helix signals in proteins
1 reference
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Crossref
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7 January 2021
based on heuristic
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Amino acid preferences for specific locations at the ends of alpha helices
1 reference
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Capping interactions in isolated alpha helices: position-dependent substitution effects and structure of a serine-capped peptide helix
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Helix stop signals in proteins and peptides: the capping box
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based on heuristic
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Alpha helix capping in synthetic model peptides by reciprocal side chain-main chain interactions: evidence for an N terminal "capping box"
1 reference
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based on heuristic
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Sequence determinants of the capping box, a stabilizing motif at the N-termini of alpha-helices
1 reference
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7 January 2021
based on heuristic
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The hydrophobic-staple motif and a role for loop-residues in alpha-helix stability and protein folding.
1 reference
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7 January 2021
based on heuristic
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Rules for alpha-helix termination by glycine
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7 January 2021
based on heuristic
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Alpha-helix stability in proteins. I. Empirical correlations concerning substitution of side-chains at the N and C-caps and the replacement of alanine by glycine or serine at solvent-exposed surfaces
1 reference
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7 January 2021
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Dissection of helix capping in T4 lysozyme by structural and thermodynamic analysis of six amino acid substitutions at Thr 59.
1 reference
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7 January 2021
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Position-dependent stabilizing effects in .alpha.-helices: N-terminal capping in synthetic model peptides
1 reference
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7 January 2021
based on heuristic
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N- and C-capping preferences for all 20 amino acids in alpha-helical peptides
1 reference
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7 January 2021
based on heuristic
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Mutational analysis of the N-capping box of the alpha-helix of chymotrypsin inhibitor 2.
1 reference
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based on heuristic
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Contribution to global protein stabilization of the N-capping box in human growth hormone
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Peptide models of protein folding initiation sites. 2. The G-H turn region of myoglobin acts as a helix stop signal
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Stabilization of a type VI turn in a family of linear peptides in water solution
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7 January 2021
based on heuristic
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A short linear peptide that folds into a native stable beta-hairpin in aqueous solution
1 reference
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7 January 2021
based on heuristic
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Synthetic peptides probe folding initiation sites in platelet factor-4: stable chain reversal found within the hydrophobic sequence LIATLKNGRKISL
1 reference
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7 January 2021
based on heuristic
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Structural characterization of folded and unfolded states of an SH3 domain in equilibrium in aqueous buffer.
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
The tyrosine corner: a feature of most Greek key beta-barrel proteins
1 reference
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7 January 2021
based on heuristic
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The role of turns in the structure of an alpha-helical protein.
1 reference
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based on heuristic
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Linking an easily detectable phenotype to the folding of a common structural motif. Selection of rare turn mutations that prevent the folding of Rop.
1 reference
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based on heuristic
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Redesigning the topology of a four-helix-bundle protein: monomeric Rop.
1 reference
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7 January 2021
based on heuristic
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Dominant forces in protein folding
1 reference
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7 January 2021
based on heuristic
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Binary patterning of polar and nonpolar amino acids in the sequences and structures of native proteins
1 reference
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https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980088-1
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7 January 2021
based on heuristic
inferred from DOI database lookup
Periodicity of polar and nonpolar amino acids is the major determinant of secondary structure in self-assembling oligomeric peptides
1 reference
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
Structural and energetic consequences of disruptive mutations in a protein core
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Protein stability effects of a complete set of alanine substitutions in Arc repressor
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Functionally acceptable substitutions in two alpha-helical regions of lambda repressor.
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
Reverse hydrophobic effects relieved by amino-acid substitutions at a protein surface.
1 reference
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
The effects of hydrophilic to hydrophobic surface mutations on the denatured state of iso-1-cytochrome c: investigation of aliphatic residues
1 reference
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reference URL
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7 January 2021
based on heuristic
inferred from DOI database lookup
Protein design by binary patterning of polar and nonpolar amino acids
1 reference
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
Restored heptad pattern continuity does not alter the folding of a four-alpha-helix bundle
1 reference
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
An analysis of packing in the protein folding problem
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease
1 reference
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7 January 2021
based on heuristic
inferred from DOI database lookup
The folding of an enzyme. II. Substructure of barnase and the contribution of different interactions to protein stability
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Crossref
reference URL
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7 January 2021
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Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect
1 reference
stated in
Crossref
reference URL
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7 January 2021
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Similar hydrophobic replacements of Leu99 and Phe153 within the core of T4 lysozyme have different structural and thermodynamic consequences
1 reference
stated in
Crossref
reference URL
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7 January 2021
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Critical side-chain interactions at a subunit interface in the Arc repressor dimer.
1 reference
stated in
Crossref
reference URL
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7 January 2021
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Alternative packing arrangements in the hydrophobic core of λrepresser
1 reference
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Crossref
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7 January 2021
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Energetics of repacking a protein interior
1 reference
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Crossref
reference URL
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7 January 2021
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The role of internal packing interactions in determining the structure and stability of a protein
1 reference
stated in
Crossref
reference URL
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7 January 2021
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The role of backbone flexibility in the accommodation of variants that repack the core of T4 lysozyme
1 reference
stated in
Crossref
reference URL
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7 January 2021
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Exploring the interface between the N- and C-terminal helices of cytochrome c by random mutagenesis within the C-terminal helix
1 reference
stated in
Crossref
reference URL
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7 January 2021
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The crystal structure of a mutant protein with altered but improved hydrophobic core packing
1 reference
stated in
Crossref
reference URL
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7 January 2021
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A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants
1 reference
stated in
Crossref
reference URL
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7 January 2021
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Crystal structure of an isoleucine-zipper trimer
1 reference
stated in
Crossref
reference URL
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7 January 2021
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Crystal structure of a synthetic triple-stranded alpha-helical bundle
1 reference
stated in
Crossref
reference URL
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7 January 2021
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Packing and hydrophobicity effects on protein folding and stability: effects of beta-branched amino acids, valine and isoleucine, on the formation and stability of two-stranded alpha-helical coiled coils/leucine zippers
1 reference
stated in
Crossref
reference URL
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7 January 2021
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Design of two-stranded and three-stranded coiled-coil peptides
1 reference
stated in
Crossref
reference URL
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7 January 2021
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Kinetics of folding of leucine zipper domains.
1 reference
stated in
Crossref
reference URL
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7 January 2021
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Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980088-1
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7 January 2021
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Optimal sequence selection in proteins of known structure by simulated evolution
1 reference
stated in
Crossref
reference URL
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7 January 2021
based on heuristic
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Energy minimization method using automata network for sequence and side-chain conformation prediction from given backbone geometry.
1 reference
stated in
Crossref
reference URL
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7 January 2021
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Do salt bridges stabilize proteins? A continuum electrostatic analysis.
1 reference
stated in
Crossref
reference URL
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7 January 2021
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A buried polar interaction imparts structural uniqueness in a designed heterodimeric coiled coil
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980088-1
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7 January 2021
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Structural comparisons among the short-chain helical cytokines
1 reference
stated in
Crossref
reference URL
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7 January 2021
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Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980088-1
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7 January 2021
based on heuristic
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Conservation of salt bridges in protein families
1 reference
stated in
Crossref
reference URL
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7 January 2021
based on heuristic
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Are buried salt bridges important for protein stability and conformational specificity?
1 reference
stated in
Crossref
reference URL
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7 January 2021
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Identifiers
DOI
10.1016/S0959-440X(96)80088-1
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
548155
stated in
Europe PubMed Central
PubMed publication ID
8696970
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8696970%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 October 2019
OpenCitations bibliographic resource ID
548155
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
548155
PubMed publication ID
8696970
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
548155
stated in
Europe PubMed Central
PubMed publication ID
8696970
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8696970%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 October 2019
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