(Q28346199)

5 July 2017

title

The physical basis of nucleic acid base stacking in water (English)

1 reference

5 July 2017

0 references

R Luo

1

1 reference

5 July 2017

H S Gilson

series ordinal

2

1 reference

5 July 2017

M J Potter

series ordinal

3

1 reference

5 July 2017

M K Gilson

series ordinal

4

1 reference

5 July 2017

language of work or name

English

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publication date

1 January 2001

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5 July 2017

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5 July 2017

volume

80

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5 July 2017

issue

1

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5 July 2017

page(s)

140-148

1 reference

Preorganization of DNA: Design Principles for Improving Nucleic Acid Recognition by Synthetic Oligonucleotides

5 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301220

The statistical-thermodynamic basis for computation of binding affinities: a critical review

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301220

Hydrogen bonding and stacking of DNA bases: a review of quantum-chemical ab initio studies.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301220

A free energy analysis of nucleic acid base stacking in aqueous solution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301220

New evidence that the hydrophobic effect and dispersion are not major driving forces for nucleotide base stacking

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301220

Nucleic acid base-pairing and N-methylacetamide self-association in chloroform: affinity and conformation.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301220

Focusing of electric fields in the active site of Cu-Zn superoxide dismutase: effects of ionic strength and amino-acid modification

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301220

Ab InitioStudy of Stacking Interactions in A- and B-DNA

27 November 2018

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Temperature dependence of thermal motion in crystalline naphthalene

7 January 2021

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CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

7 January 2021

1 reference

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Experimental Measurement of Aromatic Stacking Affinities in the Context of Duplex DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976001-8

Factors Contributing to Aromatic Stacking in Water: Evaluation in the Context of DNA.

7 January 2021

1 reference

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Performance of empirical potentials (AMBER, CFF95, CVFF, CHARMM, OPLS, POLTEV), semiempirical quantum chemical methods (AM1, MNDO/M, PM3), andab initio Hartree-Fock method for interaction of DNA bases: Comparison with nonempirical beyond Hartree-Fock

7 January 2021

1 reference

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Structure and Properties of Benzene-Containing Molecular Clusters: Nonempirical ab Initio Calculations and Experiments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976001-8

Structure, Energetics, and Dynamics of the Nucleic Acid Base Pairs: NonempiricalAb InitioCalculations

7 January 2021

1 reference

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Family of G protein alpha chains: amphipathic analysis and predicted structure of functional domains

7 January 2021

1 reference

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Controlled interaction between nucleic acid bases. Intramolecular stacking interactions between two adenine rings

7 January 2021

1 reference

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Synthetic Adenine Receptors: Direct Calculation of Binding Affinity and Entropy

7 January 2021

1 reference

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pKaShifts in Small Molecules and HIV Protease: Electrostatics and Conformation

7 January 2021

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All-atom empirical potential for molecular modeling and dynamics studies of proteins

7 January 2021

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General atomic and molecular electronic structure system

7 January 2021

1 reference

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Nature of Nucleic Acid−Base Stacking: Nonempirical ab Initio and Empirical Potential Characterization of 10 Stacked Base Dimers. Comparison of Stacked and H-Bonded Base Pairs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976001-8

Semianalytical treatment of solvation for molecular mechanics and dynamics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976001-8

Calculation of the electric potential in the active site cleft due to alpha-helix dipoles

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2976001-8

The inclusion of electrostatic hydration energies in molecular mechanics calculations

7 January 2021

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11159389

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/S0006-3495(01)76001-8

1 reference

5 July 2017

1 reference

5 July 2017

1 reference