(Q28362673)

6 July 2017

Investigation of adenosine base ionization in the hairpin ribozyme by nucleotide analog interference mapping (English)

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6 July 2017

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S P Ryder

1

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6 July 2017

A K Oyelere

2

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6 July 2017

J L Padilla

3

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6 July 2017

D Klostermeier

4

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6 July 2017

D P Millar

5

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6 July 2017

S A Strobel

6

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6 July 2017

language of work or name

English

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publication date

1 October 2001

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6 July 2017

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6 July 2017

7

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6 July 2017

10

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6 July 2017

1454-1463

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Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis

6 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370189

The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370189

Crystal structure of a hepatitis delta virus ribozyme

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370189

Defining the chemical groups essential for Tetrahymena group I intron function by nucleotide analog interference mapping

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370189

X-ray crystallographic studies of alanine-65 variants of carbonic anhydrase II reveal the structural basis of compromised proton transfer in catalysis

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370189

RNA catalytic properties of the minimum (-)sTRSV sequence

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370189

Two sequences participating in the autolytic processing of satellite tobacco ringspot virus complementary RNA

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370189

Tertiary structure formation in the hairpin ribozyme monitored by fluorescence resonance energy transfer

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370189

Hairpin ribozyme cleavage catalyzed by aminoglycoside antibiotics and the polyamine spermine in the absence of metal ions

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370189

Base and sugar requirements for RNA cleavage of essential nucleoside residues in internal loop B of the hairpin ribozyme: implications for secondary structure

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370189

Use of cis- and trans-ribozymes to remove 5' and 3' heterogeneities from milligrams of in vitro transcribed RNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370189

Essential nucleotide sequences and secondary structure elements of the hairpin ribozyme

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370189

Fluorescence studies of nucleotides and polynucleotides. I. Formycin, 2-aminopurine riboside, 2,6-diaminopurine riboside, and their derivatives.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370189

Protein Structure, Ribonuclease-S and Nucleotide Interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370189

Nucleotide analog interference mapping of the hairpin ribozyme: implications for secondary and tertiary structure formation.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370189

Solution structure of loop A from the hairpin ribozyme from tobacco ringspot virus satellite

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370189

Formycin A and its N-methyl analogues, specific inhibitors of E. coli purine nucleoside phosphorylase (PNP): induced tautomeric shifts on binding to enzyme, and enzyme-->ligand fluorescence resonance energy transfer.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370189

Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370189

Fluorescence emission properties of 8-azapurines and their nucleosides, and application to the kinetics of the reverse synthetic reaction of purine nucleoside phosphorylase.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370189

Structural basis for the guanosine requirement of the hairpin ribozyme

27 November 2018

1 reference

12 December 2020

Chemical probing of RNA by nucleotide analog interference mapping

1 reference

12 December 2020

Helical junctions as determinants for RNA folding: origin of tertiary structure stability of the hairpin ribozyme

1 reference

12 December 2020

Novel guanosine requirement for catalysis by the hairpin ribozyme

1 reference

12 December 2020

Four ribose 2'-hydroxyl groups essential for catalytic function of the hairpin ribozyme

1 reference

12 December 2020

Purine functional groups in essential residues of the hairpin ribozyme required for catalytic cleavage of RNA

1 reference

12 December 2020

An unusual pH-independent and metal-ion-independent mechanism for hairpin ribozyme catalysis

1 reference

12 December 2020

Inter-domain cross-linking and molecular modelling of the hairpin ribozyme

1 reference

12 December 2020

The role of essential pyrimidines in the hairpin ribozyme-catalysed reaction

1 reference

12 December 2020

Identifiers

PMCID

1370189

1 reference

6 July 2017

1 reference