(Q28551595)

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Metabolomics Revealed an Association of Metabolite Changes and Defective Growth in Methylobacterium extorquens AM1 Overexpressing ecm during Growth on Methanol

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scholarly article

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Metabolomics Revealed an Association of Metabolite Changes and Defective Growth in Methylobacterium extorquens AM1 Overexpressing ecm during Growth on Methanol (English)

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1 reference

based on heuristic

inferred from title

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based on heuristic

inferred from title

Methylobacterium extorquens

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based on heuristic

inferred from title

author name string

Jinyu Cui

1

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Nathan M Good

2

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Bo Hu

3

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Jing Yang

4

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Qianwen Wang

5

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Martin Sadilek

6

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Song Yang

7

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language of work or name

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publication date

2016

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11

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4

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e0154043

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copyright license

Creative Commons Attribution 4.0 International

26 April 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Employing ProteoWizard to Convert Raw Mass Spectrometry Data

1 reference

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19 March 2017

MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

19 March 2017

Synthesis of C5-dicarboxylic acids from C2-units involving crotonyl-CoA carboxylase/reductase: the ethylmalonyl-CoA pathway

1 reference

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19 March 2017

Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli

1 reference

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7 April 2017

Studies on lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli

1 reference

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7 April 2017

Engineering Methylobacterium extorquens for de novo synthesis of the sesquiterpenoid α-humulene from methanol.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

MetaboAnalyst 3.0--making metabolomics more meaningful

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Ethylmalonyl coenzyme A mutase operates as a metabolic control point in Methylobacterium extorquens AM1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Methylobacterium extorquens: methylotrophy and biotechnological applications

1 reference

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29 September 2017

Metabolic engineering of Methylobacterium extorquens AM1 for 1-butanol production

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

A set of versatile brick vectors and promoters for the assembly, expression, and integration of synthetic operons in Methylobacterium extorquens AM1 and other alphaproteobacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Global Molecular Analyses of Methane Metabolism in Methanotrophic Alphaproteobacterium, Methylosinus trichosporium OB3b. Part II. Metabolomics and 13C-Labeling Study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

MetFusion: integration of compound identification strategies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Co-consumption of methanol and succinate by Methylobacterium extorquens AM1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

A peptidoglycan fragment triggers β-lactam resistance in Bacillus licheniformis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Evaluating metabolic stress and plasmid stability in plasmid DNA production by Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

The ethylmalonyl-CoA pathway is used in place of the glyoxylate cycle by Methylobacterium extorquens AM1 during growth on acetate.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Genome-scale reconstruction and system level investigation of the metabolic network of Methylobacterium extorquens AM1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

A systems biology approach uncovers cellular strategies used by Methylobacterium extorquens AM1 during the switch from multi- to single-carbon growth

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Methanol assimilation in Methylobacterium extorquens AM1: demonstration of all enzymes and their regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Biotechnological potential of the ethylmalonyl-CoA pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Alternative route for glyoxylate consumption during growth on two-carbon compounds by Methylobacterium extorquens AM1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Metabolite profiling uncovers plasmid-induced cobalt limitation under methylotrophic growth conditions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Demonstration of the ethylmalonyl-CoA pathway by using 13C metabolomics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Methanol-based industrial biotechnology: current status and future perspectives of methylotrophic bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

How bacteria consume their own exoskeletons (turnover and recycling of cell wall peptidoglycan)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Identification of a fourth formate dehydrogenase in Methylobacterium extorquens AM1 and confirmation of the essential role of formate oxidation in methylotrophy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Bestowing inducibility on the cloned methanol dehydrogenase promoter (PmxaF) of Methylobacterium extorquens by applying regulatory elements of Pseudomonas putida F1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Physiological analysis of Methylobacterium extorquens AM1 grown in continuous and batch cultures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Methylotrophy in Methylobacterium extorquens AM1 from a genomic point of view

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

QscR, a LysR-type transcriptional regulator and CbbR homolog, is involved in regulation of the serine cycle genes in Methylobacterium extorquens AM1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Glyoxylate regeneration pathway in the methylotroph Methylobacterium extorquens AM1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Muramyl peptides: Immunomodulators, sleep factors, and vitamins

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Isolation and complementation analysis of 10 methanol oxidation mutant classes and identification of the methanol dehydrogenase structural gene of Methylobacterium sp. strain AM1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

29 September 2017

Release of cell wall peptides into culture medium by exponentially growing Escherichia coli

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29 September 2017

Optimization of gene expression through divergent mutational paths.

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3 June 2018

CcrR, a TetR family transcriptional regulator, activates the transcription of a gene of the Ethylmalonyl coenzyme A pathway in Methylobacterium extorquens AM1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

3 June 2018

Liquid chromatography-tandem quadrupole mass spectrometry and comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry measurement of targeted metabolites of Methylobacterium extorquens AM1 grown on two different carbon sour

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4846091

3 June 2018

High-level production of ethylmalonyl-CoA pathway-derived dicarboxylic acids by Methylobacterium extorquens under cobalt-deficient conditions and by polyhydroxybutyrate negative strains.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0154043

21 January 2018

Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0154043

21 January 2018

Bioconversion of methanol to value-added mevalonate by engineered Methylobacterium extorquens AM1 containing an optimized mevalonate pathway.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0154043

21 January 2018

Production of mevalonate by a metabolically-engineered Escherichia coli

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0154043

21 January 2018

Development of improved versatile broad-host-range vectors for use in methylotrophs and other Gram-negative bacteria

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0154043

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Multitarget quantitative metabolic profiling of hydrophilic metabolites in fermentation broths of β-lactam antibiotics production by HILIC-ESI-MS/MS.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0154043

21 January 2018

Quantification of central metabolic fluxes in the facultative methylotroph methylobacterium extorquens AM1 using 13C-label tracing and mass spectrometry

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0154043

21 January 2018

Implementation of microarrays for Methylobacterium extorquens AM1.

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0154043

21 January 2018

The integrated response of primary metabolites to gene deletions and the environment

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12 December 2020

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https://pubmed.ncbi.nlm.nih.gov/27116459

12 December 2020

based on heuristic

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Construction of CoA-dependent 1-butanol synthetic pathway functions under aerobic conditions in Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/27116459

12 December 2020

based on heuristic

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Biosynthesis of polyhydroxyalkanoate copolymers from methanol by Methylobacterium extorquens AM1 and the engineered strains under cobalt-deficient conditions

1 reference

https://pubmed.ncbi.nlm.nih.gov/27116459

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Thioesterases for ethylmalonyl-CoA pathway derived dicarboxylic acid production in Methylobacterium extorquens AM1

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12 December 2020

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Identifiers

10.1371/JOURNAL.PONE.0154043

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2016PLoSO..1154043C

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OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

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