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Biological network exploration with Cytoscape 3
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scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
4174321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199793%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
title
Biological network exploration with Cytoscape 3
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
4174321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199793%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
main subject
Cytoscape
0 references
author
John "Scooter" Morris
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
4174321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199793%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
Barry Demchak
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
4174321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199793%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
Gary D. Bader
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMC publication ID
4174321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199793%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
author name string
Gang Su
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
4174321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199793%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
language of work or name
English
0 references
publication date
8 September 2014
1 reference
stated in
Europe PubMed Central
PMC publication ID
4174321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199793%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
published in
Current Protocols in Bioinformatics
2 references
stated in
PubMed
stated in
Europe PubMed Central
PMC publication ID
4174321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199793%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
volume
47
1 reference
stated in
Europe PubMed Central
PMC publication ID
4174321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199793%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
issue
1
0 references
page(s)
8.13.1-24
1 reference
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Europe PubMed Central
PMC publication ID
4174321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199793%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
describes a project that uses
Cytoscape
1 reference
based on heuristic
inferred from title
cites work
The BioGRID interaction database: 2013 update
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
17 March 2017
The IntAct molecular interaction database in 2012
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
17 March 2017
WikiPathways: building research communities on biological pathways
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
17 March 2017
Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
17 March 2017
Michigan molecular interactions r2: from interacting proteins to pathways
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
17 March 2017
The human disease network
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
17 March 2017
NCBI GEO: mining tens of millions of expression profiles--database and tools update
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
17 March 2017
Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
17 March 2017
Reactome: a knowledgebase of biological pathways
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
17 March 2017
Cytoscape: a software environment for integrated models of biomolecular interaction networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
17 March 2017
An automated method for finding molecular complexes in large protein interaction networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
17 March 2017
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
17 March 2017
Genomic expression programs in the response of yeast cells to environmental changes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
17 March 2017
BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
7 April 2017
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
7 April 2017
Discovering regulatory and signalling circuits in molecular interaction networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
7 April 2017
A travel guide to Cytoscape plugins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
7 April 2017
Comparison of computational methods for the identification of cell cycle-regulated genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
9 May 2017
NeXO Web: the NeXO ontology database and visualization platform.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
3 June 2018
GeneMANIA prediction server 2013 update
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
3 June 2018
Cytoscape app store
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
3 June 2018
A gene ontology inferred from molecular networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
3 June 2018
Topological analysis and interactive visualization of biological networks and protein structures
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
3 June 2018
Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
3 June 2018
Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
3 June 2018
clusterMaker: a multi-algorithm clustering plugin for Cytoscape
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
3 June 2018
GLay: community structure analysis of biological networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
3 June 2018
GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
3 June 2018
How to visually interpret biological data using networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
3 June 2018
Analyzing biological network parameters with CentiScaPe
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
3 June 2018
Using sequence similarity networks for visualization of relationships across diverse protein superfamilies.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
3 June 2018
The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
3 June 2018
Reverse engineering cellular networks.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
3 June 2018
The KEGG database.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
3 June 2018
BIND--The Biomolecular Interaction Network Database
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4174321
retrieved
3 June 2018
Analyzing and visualizing residue networks of protein structures
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2F0471250953.BI0813S47
retrieved
21 January 2018
structureViz: linking Cytoscape and UCSF Chimera.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2F0471250953.BI0813S47
retrieved
21 January 2018
An architecture for biological information extraction and representation.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2F0471250953.BI0813S47
retrieved
21 January 2018
Identifiers
DOI
10.1002/0471250953.BI0813S47
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1897500
stated in
Europe PubMed Central
PMC publication ID
4174321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199793%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
OpenCitations bibliographic resource ID
1897500
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1897500
PMC publication ID
4174321
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1897500
stated in
Europe PubMed Central
PMC publication ID
4174321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199793%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
PubMed publication ID
25199793
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1897500
stated in
Europe PubMed Central
PMC publication ID
4174321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25199793%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
ResearchGate publication ID
265474752
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