Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q28655611)
Watch
English
SPANDx: a genomics pipeline for comparative analysis of large haploid whole genome re-sequencing datasets
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
4169827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25201145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
title
SPANDx: a genomics pipeline for comparative analysis of large haploid whole genome re-sequencing datasets
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
4169827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25201145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
main subject
genomics
0 references
whole genome sequencing
1 reference
based on heuristic
inferred from title
author
Derek S Sarovich
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
4169827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25201145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
Erin P. Price
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
4169827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25201145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
author name string
Derek S Sarovich
series ordinal
1
0 references
Erin P Price
series ordinal
2
0 references
language of work or name
English
0 references
publication date
8 September 2014
1 reference
stated in
Europe PubMed Central
PMC publication ID
4169827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25201145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
published in
BMC Research Notes
1 reference
stated in
Europe PubMed Central
PMC publication ID
4169827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25201145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
volume
7
1 reference
stated in
Europe PubMed Central
PMC publication ID
4169827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25201145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
issue
1
0 references
page(s)
618
1 reference
stated in
Europe PubMed Central
PMC publication ID
4169827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25201145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
cites work
Burkholderia pseudomallei isolates from Sarawak, Malaysian Borneo, are predominantly susceptible to aminoglycosides and macrolides
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
17 March 2017
Parallel evolutionary dynamics of adaptive diversification in Escherichia coli
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
17 March 2017
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
17 March 2017
Using Tablet for visual exploration of second-generation sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
17 March 2017
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
17 March 2017
Genome evolution and adaptation in a long-term experiment with Escherichia coli
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
17 March 2017
The Sequence Alignment/Map format and SAMtools
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
17 March 2017
Fast and accurate short read alignment with Burrows-Wheeler transform
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
17 March 2017
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
17 March 2017
Genome sequencing in microfabricated high-density picolitre reactors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
17 March 2017
Genomic Sequence of an Otitis Media Isolate of Nontypeable Haemophilus influenzae: Comparative Study with H. influenzae Serotype d, Strain KW20
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
17 March 2017
A framework for variation discovery and genotyping using next-generation DNA sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
7 April 2017
BEDTools: a flexible suite of utilities for comparing genomic features
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
7 April 2017
Fast and accurate long-read alignment with Burrows-Wheeler transform
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
7 April 2017
Galaxy: a platform for interactive large-scale genome analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
7 April 2017
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
7 April 2017
The variant call format and VCFtools
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
7 April 2017
Stormbow: A Cloud-Based Tool for Reads Mapping and Expression Quantification in Large-Scale RNA-Seq Studies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
20 June 2018
Absence of an important vaccine and diagnostic target in carriage- and disease-related nontypeable Haemophilus influenzae.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
20 June 2018
Accurate and rapid identification of the Burkholderia pseudomallei near-neighbour, Burkholderia ubonensis, using real-time PCR
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
20 June 2018
Within-host evolution of Burkholderia pseudomallei over a twelve-year chronic carriage infection
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
20 June 2018
Long-term experimental evolution in Escherichia coli. IX. Characterization of insertion sequence-mediated mutations and rearrangements
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4169827
retrieved
20 June 2018
Identifiers
DOI
10.1186/1756-0500-7-618
1 reference
stated in
Europe PubMed Central
PMC publication ID
4169827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25201145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
Dimensions Publication ID
1000516025
1 reference
stated in
SciGraph
retrieved
9 September 2019
reference URL
https://scigraph.springernature.com/pub.10.1186/1756-0500-7-618
PMC publication ID
4169827
1 reference
stated in
Europe PubMed Central
PMC publication ID
4169827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25201145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
PubMed publication ID
25201145
1 reference
stated in
Europe PubMed Central
PMC publication ID
4169827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25201145%20AND%20SRC:MED&resulttype=core&format=json
retrieved
16 February 2020
ResearchGate publication ID
265468864
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
