(Q28710442)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23226971%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

title

Low rates of lateral gene transfer among metabolic genes define the evolving biogeochemical niches of archaea through deep time (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23226971%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

main subject

horizontal gene transfer

0 references

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23226971%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

author name string

Carrine E Blank

series ordinal

1

0 references

language of work or name

English

0 references

publication date

22 November 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23226971%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23226971%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

volume

2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23226971%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

page(s)

843539

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23226971%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 3.0 Unported

20 February 2020

copyright license

start time

1 January 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Vulcanisaeta distributa gen. nov., sp. nov., and Vulcanisaeta souniana sp. nov., novel hyperthermophilic, rod-shaped crenarchaeotes isolated from hot springs in Japan

17 March 2017

3 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

17 March 2017

https://api.crossref.org/works/10.1155/2012/843539

22 April 2017

https://api.crossref.org/works/10.1155%2F2012%2F843539

Caldivirga maquilingensis gen. nov., sp. nov., a new genus of rod-shaped crenarchaeote isolated from a hot spring in the Philippines

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Horizontal gene transfer among genomes: the complexity hypothesis

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Aeropyrum pernix gen. nov., sp. nov., a novel aerobic hyperthermophilic archaeon growing at temperatures up to 100 degrees C

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Multiple sequence alignment using ClustalW and ClustalX

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

7 April 2017

https://api.crossref.org/works/10.1155%2F2012%2F843539

Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach

22 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

7 April 2017

https://api.crossref.org/works/10.1155%2F2012%2F843539

CONSEL: for assessing the confidence of phylogenetic tree selection

21 January 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

7 April 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Lateral gene transfer as a support for the tree of life

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

An expansion of age constraints for microbial clades that lack a conventional fossil record using phylogenomic dating

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Terminal oxidase diversity and function in "Metallosphaera yellowstonensis": gene expression and protein modeling suggest mechanisms of Fe(II) oxidation in the sulfolobales

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

The impact of rRNA secondary structure consideration in alignment and tree reconstruction: simulated data and a case study on the phylogeny of hexapods

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Evolutionary constraints permeate large metabolic networks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Phylogeny of prokaryotes: does it exist and why should we care?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Metabolism of halophilic archaea

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Expression and association of group IV nitrogenase NifD and NifH homologs in the non-nitrogen-fixing archaeon Methanocaldococcus jannaschii.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Halorubrum arcis sp. nov., an extremely halophilic archaeon isolated from a saline lake on the Qinghai-Tibet Plateau, China

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Phylogenetic signal and functional categories in Proteobacteria genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Nitrogen fixation at 92 degrees C by a hydrothermal vent archaeon

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Methanococcus aeolicus sp. nov., a mesophilic, methanogenic archaeon from shallow and deep marine sediments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Identification of putative sulfurtransferase genes in the extremophilic Acidithiobacillus ferrooxidans ATCC 23270 genome: structural and functional characterization of the proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

The natural history of nitrogen fixation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Characterization of an exo-beta-D-glucosaminidase involved in a novel chitinolytic pathway from the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Growth of hyperthermophilic archaeon Pyrococcus furiosus on chitin involves two family 18 chitinases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Pyrobaculum oguniense sp. nov., a novel facultatively aerobic and hyperthermophilic archaeon growing at up to 97 degrees C.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3512248

Phylogenomic dating--the relative antiquity of archaeal metabolic and physiological traits.

20 June 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F843539

Adaptive evolution of bacterial metabolic networks by horizontal gene transfer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F843539

Not so old Archaea - the antiquity of biogeochemical processes in the archaeal domain of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F843539

Phylogenomic dating--a method of constraining the age of microbial taxa that lack a conventional fossil record

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F843539

Assessment of phylogenomic and orthology approaches for phylogenetic inference.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F843539

The superfamily of heme-copper oxygen reductases: types and evolutionary considerations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F843539

The multiple evolutionary histories of dioxygen reductases: Implications for the origin and evolution of aerobic respiration

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F843539

Towards the phylogeny of APS reductases and sirohaem sulfite reductases in sulfate-reducing and sulfur-oxidizing prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F843539

Membrane-bound hydrogenase and sulfur reductase of the hyperthermophilic and acidophilic archaeon Acidianus ambivalens.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F843539

Respiratory nitrate and nitrite pathway in the denitrifier haloarchaeon Haloferax mediterranei

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F843539

A molecular and physiological survey of a diverse collection of hydrothermal vent Thermococcus and Pyrococcus isolates

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F843539

Concerted action of diacetylchitobiose deacetylase and exo-beta-D-glucosaminidase in a novel chitinolytic pathway in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F843539

The thermophilic archaeon Sulfolobus solfataricus is able to grow on phenol

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F843539

Comparative analysis of the catechol 2,3-dioxygenase gene locus in thermoacidophilic archaeon Sulfolobus solfataricus strain 98/2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F843539

Molecular evolution of nitrogen fixation: the evolutionary history of the nifD, nifK, nifE, and nifN genes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23226971

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Chitinase from Thermococcus kodakaraensis KOD1

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23226971

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1155/2012/843539

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23226971%20AND%20SRC:MED&resulttype=core&format=json

release_dnv5c4cuwncnlf5sq46mpbsgba

20 February 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/dnv5c4cuwncnlf5sq46mpbsgba

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23226971%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

PubMed publication ID

23226971

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23226971%20AND%20SRC:MED&resulttype=core&format=json