(Q28710503)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23209628%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

title

Origin and evolution of retinoid isomerization machinery in vertebrate visual cycle: hint from jawless vertebrates (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23209628%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

7

1 reference

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19 February 2020

T. Michael Redmond

8

1 reference

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19 February 2020

author name string

Eugenia Poliakov

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23209628%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Alexander N Gubin

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23209628%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Olivia Stearn

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23209628%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Yan Li

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23209628%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Maria Mercedes Campos

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23209628%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

Susan Gentleman

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23209628%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

language of work or name

English

0 references

publication date

27 November 2012

1 reference

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19 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23209628%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

volume

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23209628%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

issue

11

1 reference

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19 February 2020

page(s)

e49975

1 reference

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Creative Commons CC0 License

19 February 2020

copyright license

start time

27 November 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

cites work

A late origin of the extant eukaryotic diversity: divergence time estimates using rare genomic changes

1 reference

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microRNAs revive old views about jawless vertebrate divergence and evolution

17 March 2017

1 reference

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microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate

17 March 2017

1 reference

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FastTree 2--approximately maximum-likelihood trees for large alignments

17 March 2017

1 reference

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The evolution of early vertebrate photoreceptors

17 March 2017

1 reference

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Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup

17 March 2017

1 reference

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Paleontological evidence to date the tree of life

17 March 2017

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Diversity and Function of Adaptive Immune Receptors in a Jawless Vertebrate

17 March 2017

1 reference

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The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

17 March 2017

1 reference

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Heterotachy and long-branch attraction in phylogenetics

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

RPE65 is the isomerohydrolase in the retinoid visual cycle

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Rpe65 is the retinoid isomerase in bovine retinal pigment epithelium

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

SWISS-MODEL: An automated protein homology-modeling server

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Ligand specificity in the CRAL-TRIO protein family

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Evolutionary history, structural features and biochemical diversity of the NlpC/P60 superfamily of enzymes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Selection in the evolution of gene duplications

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Long-branch attraction phenomenon and the impact of among-site rate variation on rodent phylogeny

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

On the possibility of constructive neutral evolution

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Mutations in RPE65 cause autosomal recessive childhood-onset severe retinal dystrophy

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Mutations in RPE65 cause Leber's congenital amaurosis

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

A pessimistic estimate of the time required for an eye to evolve

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

How often do duplicated genes evolve new functions?

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

The probability of duplicate gene preservation by subfunctionalization

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Correlations among amino acid sites in bHLH protein domains: an information theoretic analysis

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Vitamin A metabolism in rod and cone visual cycles

9 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Evolution and the origin of the visual retinoid cycle in vertebrates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Evolution of opsins and phototransduction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Adaptive gene loss reflects differences in the visual ecology of basal vertebrates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Unique transducins expressed in long and short photoreceptors of lamprey Petromyzon marinus.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Detecting coevolution in and among protein domains

3 June 2018

1 reference

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PDE6 in lamprey Petromyzon marinus: implications for the evolution of the visual effector in vertebrates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Origin of the vertebrate visual cycle

3 June 2018

1 reference

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The biochemical characterization of ferret carotene-9',10'-monooxygenase catalyzing cleavage of carotenoids in vitro and in vivo

3 June 2018

1 reference

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Origin of the vertebrate visual cycle: III. Distinct distribution of RPE65 and beta-carotene 15,15'-monooxygenase homologues in Ciona intestinalis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Mutation of key residues of RPE65 abolishes its enzymatic role as isomerohydrolase in the visual cycle.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

The triacylglycerol synthesis enzyme DGAT1 also catalyzes the synthesis of diacylglycerols, waxes, and retinyl esters

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Dark adaptation and the retinoid cycle of vision

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Lecithin-retinol acyltransferase is essential for accumulation of all-trans-retinyl esters in the eye and in the liver.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Amphioxus homologs of Go-coupled rhodopsin and peropsin having 11-cis- and all-trans-retinals as their chromophores.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

A family of peptidoglycan recognition proteins in the fruit fly Drosophila melanogaster

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Genetics and phenotypes of RPE65 mutations in inherited retinal degeneration.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Covariation of residues in the homeodomain sequence family

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Correlation of co-ordinated amino acid substitutions with function in viruses related to tobacco mosaic virus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Fixation of a deleterious allele at one of two "duplicate" loci by mutation pressure and random drift

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

All-trans-retinyl esters are the substrates for isomerization in the vertebrate visual cycle

3 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0049975

Retinyl esters are the substrate for isomerohydrolase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0049975

Rpe65 is necessary for production of 11-cis-vitamin A in the retinal visual cycle.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0049975

Drosophila ninaB and ninaD act outside of retina to produce rhodopsin chromophore.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0049975

Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0049975

An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0049975

Acyl coenzyme A dependent retinol esterification by acyl coenzyme A: diacylglycerol acyltransferase 1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0049975

Origin of the vertebrate visual cycle: genes encoding retinal photoisomerase and two putative visual cycle proteins are expressed in whole brain of a primitive chordate

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0049975

Ci-opsin1, a vertebrate-type opsin gene, expressed in the larval ocellus of the ascidian Ciona intestinalis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0049975

A simple statistical method for estimating type-II (cluster-specific) functional divergence of protein sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0049975

Key role of conserved histidines in recombinant mouse beta-carotene 15,15'-monooxygenase-1 activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0049975

Inferring evolutionary trees with PAUP*.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3507948

Genetic analysis of RPE65: from human disease to mouse model

27 November 2018

1 reference

12 December 2020

Analysis of the blind Drosophila mutant ninaB identifies the gene encoding the key enzyme for vitamin A formation invivo

1 reference

12 December 2020

A fast method for approximating maximum likelihoods of phylogenetic trees from nucleotide sequences

1 reference

12 December 2020

Evolution of the genetic machinery of the visual cycle: a novelty of the vertebrate eye?

1 reference

12 December 2020

The hagfish retina: electron microscopic study comparing receptor and epithelial cells in the Pacific hagfish, Polistotrema stouti, with those in the Atlantic hagfish, Myxine glutinosa

1 reference

12 December 2020

Rapid, simultaneous determination of isomers of retinal, retinal oxime and retinol by high-performance liquid chromatography

1 reference

12 December 2020

The fate of duplicated genes: loss or new function?

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0049975

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23209628%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23209628%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

PubMed publication ID

23209628

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23209628%20AND%20SRC:MED&resulttype=core&format=json