(Q28727954)

6

0 references

author name string

Sita J Lange

1

0 references

Daniel Maticzka

2

0 references

Mathias Möhl

3

0 references

Joshua N Gagnon

4

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Chris M Brown

Creative Commons Attribution-NonCommercial 3.0 Unported

5

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language of work or name

English

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publication date

July 2012

0 references

published in

Nucleic Acids Research

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volume

40

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issue

12

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page(s)

5215-26

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copyright license

start time

8 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Two covariance models for iron-responsive elements

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Discriminatory power of RNA family models

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Seed-based INTARNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1

17 March 2017

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Transterm: a database to aid the analysis of regulatory sequences in mRNAs

17 March 2017

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IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions

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17 March 2017

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Using RNA secondary structures to guide sequence motif finding towards single-stranded regions

17 March 2017

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CONTRAfold: RNA secondary structure prediction without physics-based models

17 March 2017

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Rfam: annotating non-coding RNAs in complete genomes

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Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction

17 March 2017

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

17 March 2017

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A novel RNA structural motif in the selenocysteine insertion element of eukaryotic selenoprotein mRNAs

17 March 2017

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Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

17 March 2017

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Basic local alignment search tool

17 March 2017

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The equilibrium partition function and base pair binding probabilities for RNA secondary structure

17 March 2017

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The role of site accessibility in microRNA target recognition

17 March 2017

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From structure prediction to genomic screens for novel non-coding RNAs

7 April 2017

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FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing

3 June 2018

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A conserved stem loop motif in the 5'untranslated region regulates transforming growth factor-β(1) translation

3 June 2018

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Genome-wide measurement of RNA secondary structure in yeast

3 June 2018

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Efficient use of accessibility in microRNA target prediction

3 June 2018

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RNAcontext: a new method for learning the sequence and structure binding preferences of RNA-binding proteins

3 June 2018

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Predicting in vivo binding sites of RNA-binding proteins using mRNA secondary structure

3 June 2018

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Translation efficiency is determined by both codon bias and folding energy

3 June 2018

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IRESite--a tool for the examination of viral and cellular internal ribosome entry sites

3 June 2018

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NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure

3 June 2018

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Relative contribution of sequence and structure features to the mRNA binding of Argonaute/EIF2C-miRNA complexes and the degradation of miRNA targets

3 June 2018

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Immunopurification of Ago1 miRNPs selects for a distinct class of microRNA targets.

3 June 2018

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Improved RNA secondary structure prediction by maximizing expected pair accuracy

3 June 2018

1 reference

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Coding-sequence determinants of gene expression in Escherichia coli

3 June 2018

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A hierarchical model for evolution of 23S ribosomal RNA.

3 June 2018

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UNAFold: software for nucleic acid folding and hybridization

3 June 2018

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RNA STRAND: the RNA secondary structure and statistical analysis database

3 June 2018

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Centroid estimation in discrete high-dimensional spaces with applications in biology

3 June 2018

1 reference

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Pre-mRNA secondary structures influence exon recognition.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384308

Rational design and rapid screening of antisense oligonucleotides for prokaryotic gene modulation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384308

A comparison of thermodynamic foldings with comparatively derived structures of 16S and 16S-like rRNAs.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384308

Sequential folding of a messenger RNA molecule

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384308

The impact of target site accessibility on the design of effective siRNAs

3 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS181

A detailed investigation of accessibilities around target sites of siRNAs and miRNAs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS181

Fast folding and comparison of RNA secondary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS181

Prediction of locally stable RNA secondary structures for genome-wide surveys.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS181

Rfold: an exact algorithm for computing local base pairing probabilities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS181

Local RNA base pairing probabilities in large sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS181

RNA Accessibility in cubic time

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS181

The language of RNA: a formal grammar that includes pseudoknots.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS181

Clustering of RNA secondary structures with application to messenger RNAs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS181

An analysis of large rRNA sequences folded by a thermodynamic method.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS181

Experimentally derived nearest-neighbor parameters for the stability of RNA three- and four-way multibranch loops

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS181

Thermodynamics of three-way multibranch loops in RNA

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22373926

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKS181

1 reference

1807813

1807813

1 reference

1 reference

1 reference