Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q28728477)
Watch
English
A hierarchical Bayesian model for calibrating estimates of species divergence times
scientific article (publication date: October 2012)
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
3417043
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22334343%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
title
A hierarchical Bayesian model for calibrating estimates of species divergence times
(English)
1 reference
stated in
Europe PubMed Central
PMCID
3417043
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22334343%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
main subject
model calibration
1 reference
based on heuristic
inferred from title
author
Tracy A. Heath
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
3417043
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22334343%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
author name string
Tracy A Heath
series ordinal
1
0 references
language of work or name
English
0 references
publication date
14 February 2012
1 reference
stated in
Europe PubMed Central
PMCID
3417043
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22334343%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
published in
Systematic Biology
1 reference
stated in
Europe PubMed Central
PMCID
3417043
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22334343%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
volume
61
1 reference
stated in
Europe PubMed Central
PMCID
3417043
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22334343%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
issue
5
1 reference
stated in
Europe PubMed Central
PMCID
3417043
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22334343%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
page(s)
793-809
1 reference
stated in
Europe PubMed Central
PMCID
3417043
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22334343%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
cites work
A total-evidence approach to dating with fossils, applied to the early radiation of the hymenoptera
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
17 March 2017
A dirichlet process prior for estimating lineage-specific substitution rates
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
17 March 2017
Exploring uncertainty in the calibration of the molecular clock
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
17 March 2017
Calibrated tree priors for relaxed phylogenetics and divergence time estimation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
17 March 2017
Dating primate divergences through an integrated analysis of palaeontological and molecular data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
17 March 2017
Bayesian random local clocks, or one rate to rule them all
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
17 March 2017
BEAST: Bayesian evolutionary analysis by sampling trees
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
17 March 2017
The Impact of Fossils and Taxon Sampling on Ancient Molecular Dating Analyses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
17 March 2017
Paleontological evidence to date the tree of life
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
17 March 2017
Relaxed phylogenetics and dating with confidence
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
17 March 2017
Estimation of primate speciation dates using local molecular clocks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
17 March 2017
A compound poisson process for relaxing the molecular clock
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
17 March 2017
Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
7 April 2017
Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
7 April 2017
A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
7 April 2017
Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach
2 references
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
7 April 2017
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
27 November 2018
Estimating the rate of evolution of the rate of molecular evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
7 April 2017
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
7 April 2017
DendroPy: a Python library for phylogenetic computing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
7 April 2017
The conditioned reconstructed process
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
7 April 2017
Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
7 April 2017
Performance of a divergence time estimation method under a probabilistic model of rate evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
7 April 2017
Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
7 April 2017
A general comparison of relaxed molecular clock models
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
7 April 2017
Calibration choice, rate smoothing, and the pattern of tetrapod diversification according to the long nuclear gene RAG-1
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
7 April 2017
Inferring speciation times under an episodic molecular clock
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
7 April 2017
The reconstructed evolutionary process
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
7 April 2017
Evaluating fossil calibrations for dating phylogenies in light of rates of molecular evolution: a comparison of three approaches
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
3 June 2018
Taxonomic structure of the fossil record is shaped by sampling bias
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
3 June 2018
Divergence time estimation using fossils as terminal taxa and the origins of Lissamphibia.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
3 June 2018
Simulating trees with a fixed number of extant species
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
3 June 2018
Phylogenetic relationships of the Cretaceous frog Beelzebufo from Madagascar and the placement of fossil constraints based on temporal and phylogenetic evidence.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
3 June 2018
Combining phylogenomics and fossils in higher-level squamate reptile phylogeny: molecular data change the placement of fossil taxa
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
3 June 2018
A Bayesian phylogenetic method to estimate unknown sequence ages
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
3 June 2018
Sampling-through-time in birth-death trees
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
3 June 2018
On incomplete sampling under birth-death models and connections to the sampling-based coalescent
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
3 June 2018
Phylogeny and biogeography of Alangiaceae (Cornales) inferred from DNA sequences, morphology, and fossils
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
3 June 2018
Phylogenetic uncertainty and molecular clock calibrations: a case study of legless lizards (Pygopodidae, Gekkota).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
3 June 2018
A simple method for bracketing absolute divergence times on molecular phylogenies using multiple fossil calibration points
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
3 June 2018
Inference of population structure under a Dirichlet process model
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
3 June 2018
A Dirichlet process model for detecting positive selection in protein-coding DNA sequences.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
3 June 2018
Precision of molecular time estimates
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
3 June 2018
Dating the tree of life
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
3 June 2018
Morphology, fossils, divergence timing, and the phylogenetic relationships of Gavialis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
3 June 2018
Converting distance to time: application to human evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
3 June 2018
Integrating fossil preservation biases in the selection of calibrations for molecular divergence time estimation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
27 November 2018
Sampling trees from evolutionary models
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
27 November 2018
Using fossils to break long branches in molecular dating: a comparison of relaxed clocks applied to the origin of angiosperms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
27 November 2018
Fourteen nuclear genes provide phylogenetic resolution for difficult nodes in the turtle tree of life
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
27 November 2018
A nonparametric method for accommodating and testing across-site rate variation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
27 November 2018
Assessing calibration uncertainty in molecular dating: the assignment of fossils to alternative calibration points
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
27 November 2018
Bayesian estimation of concordance among gene trees.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
27 November 2018
Continuous and tractable models for the variation of evolutionary rates.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
27 November 2018
Assessing concordance of fossil calibration points in molecular clock studies: an example using turtles.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
27 November 2018
Comparison of Likelihood and Bayesian Methods for Estimating Divergence Times Using Multiple Gene Loci and Calibration Points, with Application to a Radiation of Cute-Looking Mouse Lemur Species
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
27 November 2018
Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3417043
retrieved
27 November 2018
Identifiers
DOI
10.1093/SYSBIO/SYS032
1 reference
stated in
Europe PubMed Central
PMCID
3417043
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22334343%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
PMCID
3417043
1 reference
stated in
Europe PubMed Central
PMCID
3417043
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22334343%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
PubMed ID
22334343
1 reference
stated in
Europe PubMed Central
PMCID
3417043
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22334343%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
ResearchGate publication ID
221832382
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
