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BeadDataPackR: A Tool to Facilitate the Sharing of Raw Data from Illumina BeadArray Studies
scientific article (publication date: 29 September 2010)
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Europe PubMed Central
PMC publication ID
2956622
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20981138%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
title
BeadDataPackR: A Tool to Facilitate the Sharing of Raw Data from Illumina BeadArray Studies
(English)
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stated in
Europe PubMed Central
PMC publication ID
2956622
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20981138%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
main subject
data sharing
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author
Mike L Smith
series ordinal
1
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Europe PubMed Central
PMC publication ID
2956622
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20981138%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
author name string
Andy G Lynch
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2
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Europe PubMed Central
PMC publication ID
2956622
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20981138%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
language of work or name
English
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publication date
29 September 2010
1 reference
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Europe PubMed Central
PMC publication ID
2956622
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20981138%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
published in
Cancer Informatics
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Europe PubMed Central
PMC publication ID
2956622
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20981138%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
volume
9
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Europe PubMed Central
PMC publication ID
2956622
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20981138%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
page(s)
217-227
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Europe PubMed Central
PMC publication ID
2956622
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20981138%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
describes a project that uses
limma
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22 June 2022
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https://europepmc.org/article/PMC/2956622
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cites work
Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
16 March 2017
Species-specific transcription in mice carrying human chromosome 21
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
16 March 2017
Comprehensive genomic characterization defines human glioblastoma genes and core pathways
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
16 March 2017
Genome-wide association study identifies novel breast cancer susceptibility loci
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
16 March 2017
Bioconductor: open software development for computational biology and bioinformatics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
16 March 2017
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
16 March 2017
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
16 March 2017
Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
16 March 2017
Identification and correction of previously unreported spatial phenomena using raw Illumina BeadArray data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
3 June 2018
A metadata approach for clinical data management in translational genomics studies in breast cancer.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
3 June 2018
A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
3 June 2018
Illumina WG-6 BeadChip strips should be normalized separately
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
3 June 2018
BRB-ArrayTools Data Archive for human cancer gene expression: a unique and efficient data sharing resource
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
3 June 2018
Statistical methods of background correction for Illumina BeadArray data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
3 June 2018
Considerations for the processing and analysis of GoldenGate-based two-colour Illumina platforms.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
3 June 2018
BASH: a tool for managing BeadArray spatial artefacts
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
3 June 2018
Effects of common germline genetic variation in cell cycle control genes on breast cancer survival: results from a population-based cohort
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
3 June 2018
Analysis of the mechanisms mediating tumor-specific changes in gene expression in human liver tumors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
3 June 2018
Statistical issues in the analysis of Illumina data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
3 June 2018
Model-based variance-stabilizing transformation for Illumina microarray data.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
3 June 2018
beadarray: R classes and methods for Illumina bead-based data.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
3 June 2018
Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
3 June 2018
Breast tumor copy number aberration phenotypes and genomic instability
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
3 June 2018
Decoding randomly ordered DNA arrays
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
3 June 2018
Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
3 June 2018
Extending microarray quality control and analysis algorithms to Illumina chip platform
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
27 November 2018
Gridding and compression of microarray images.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2956622
retrieved
27 November 2018
When the chips are down
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20981138
retrieved
12 December 2020
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inferred from PubMed ID database lookup
Identifiers
PMC publication ID
2956622
1 reference
stated in
Europe PubMed Central
PMC publication ID
2956622
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20981138%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
PubMed publication ID
20981138
1 reference
stated in
Europe PubMed Central
PMC publication ID
2956622
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20981138%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
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