(Q28776438)

English

Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence

scientific article (publication date: May 2001)

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scholarly article

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11337478%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence (English)

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11337478%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

1 reference

based on heuristic

inferred from title

rapid evolution

1 reference

based on heuristic

inferred from title

Tatyana Nesterova

1

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11337478%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

Igor B. Rogozin

7

1 reference

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7 November 2019

Neil Brockdorff

9

1 reference

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7 November 2019

10

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7 November 2019

author name string

S Y Slobodyanyuk

2

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7 November 2019

E A Elisaphenko

3

1 reference

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7 November 2019

A I Shevchenko

4

1 reference

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7 November 2019

C Johnston

5

1 reference

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7 November 2019

M E Pavlova

6

1 reference

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7 November 2019

N N Kolesnikov

8

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7 November 2019

language of work or name

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publication date

1 May 2001

1 reference

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7 November 2019

Genome Research

1 reference

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7 November 2019

11

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11337478%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

5

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11337478%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

833-849

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11337478%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

describes a project that uses

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC311126/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

Comparative genome sequence analysis of the Bpa/Str region in mouse and Man

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

16 March 2017

Molecular evidence for a relationship between LINE-1 elements and X chromosome inactivation: the Lyon repeat hypothesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

16 March 2017

PipMaker--a web server for aligning two genomic DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

16 March 2017

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

16 March 2017

Tandem repeats finder: a program to analyze DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

16 March 2017

Identification and characterization of the human XIST gene promoter: implications for models of X chromosome inactivation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

16 March 2017

XIST RNA paints the inactive X chromosome at interphase: evidence for a novel RNA involved in nuclear/chromosome structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

16 March 2017

Continental breakup and the ordinal diversification of birds and mammals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

16 March 2017

CLUSTAL: a package for performing multiple sequence alignment on a microcomputer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

16 March 2017

Improved tools for biological sequence comparison

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

16 March 2017

CpG-rich islands and the function of DNA methylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

16 March 2017

Molecular phylogeny of Rodentia, Lagomorpha, Primates, Artiodactyla, and Carnivora and molecular clocks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

16 March 2017

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

16 March 2017

Repbase update: a database and an electronic journal of repetitive elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

7 April 2017

Requirement for Xist in X chromosome inactivation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

7 April 2017

The human XIST gene: analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

7 April 2017

Gene action in the X-chromosome of the mouse (Mus musculus L.)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

7 April 2017

Rates of DNA sequence evolution differ between taxonomic groups

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

7 April 2017

The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

7 April 2017

Long terminal repeats are used as alternative promoters for the endothelin B receptor and apolipoprotein C-I genes in humans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

CpG methylation as a mechanism for the regulation of E2F activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

A revision of the human XIST gene organization and structural comparison with mouse Xist

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Further examination of the Xist promoter-switch hypothesis in X inactivation: evidence against the existence and function of a P(0) promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

A new structure for the murine Xist gene and its relationship to chromosome choice/counting during X-chromosome inactivation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Tsix, a gene antisense to Xist at the X-inactivation centre

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Repetitive DNA sequences in the common vole: cloning, characterization and chromosome localization of two novel complex repeats MS3 and MS4 from the genome of the East European vole Microtus rossiaemeridionalis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Developmentally regulated Xist promoter switch mediates initiation of X inactivation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Evolutionary parameters of the transcribed mammalian genome: an analysis of 2,820 orthologous rodent and human sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Cloning and localization of the murine Xpct gene: evidence for complex rearrangements during the evolution of the region around the Xist gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Regulatory elements in the minimal promoter region of the mouse Xist gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

X chromosome inactivation is mediated by Xist RNA stabilization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

XIST expression in human oocytes and preimplantation embryos

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Many human L1 elements are capable of retrotransposition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Long-range cis effects of ectopic X-inactivation centres on a mouse autosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Xist has properties of the X-chromosome inactivation centre

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

A 94 kb genomic sequence 3' to the murine Xist gene reveals an AT rich region containing a new testis specific gene Tsx.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Organization and chromosomal localization of a B1-like containing repeat of Microtus subarvalis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Expression of Xist during mouse development suggests a role in the initiation of X chromosome inactivation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Evolutionary conservation of possible functional domains of the human and murine XIST genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Demonstration of the X-linkage and order to the genes GLA, G6PD, HPRT, and PGK in two vole species of the genus Microtus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Relationships of the chromosomal species in the Eurasian mole rats of the Spalax ehrenbergi group as determined by DNA-DNA hybridization, and an estimate of the spalacid-murid divergence time

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Differential distribution of long and short interspersed element sequences in the mouse genome: chromosome karyotyping by fluorescence in situ hybridization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

A transpositionally and transcriptionally competent Alu subfamily

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Conservation of position and exclusive expression of mouse Xist from the inactive X chromosome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Characterization of a murine gene expressed from the inactive X chromosome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Mammalian phylogeny: shaking the tree

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

Control of chromosome inactivation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

3 June 2018

A 450 kb transgene displays properties of the mammalian X-inactivation center.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

20 June 2018

Comparative chromosome and mitochondrial DNA analyses and phylogenetic relationships within common voles (Microtus, Arvicolidae).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

26 November 2018

X-chromosome inactivation: a repeat hypothesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

26 November 2018

Stabilization of Xist RNA mediates initiation of X chromosome inactivation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

26 November 2018

Quantitative RT-PCR assays show Xist RNA levels are low in mouse female adult tissue, embryos and embryoid bodies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=311126

26 November 2018

Xist RNA exhibits a banded localization on the inactive X chromosome and is excluded from autosomal material in cis

1 reference

https://pubmed.ncbi.nlm.nih.gov/11337478

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The search for the mouse X-chromosome inactivation centre

1 reference

https://pubmed.ncbi.nlm.nih.gov/11337478

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mapping the murine Xce locus with (CA)n repeats

1 reference

https://pubmed.ncbi.nlm.nih.gov/11337478

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High resolution G-banding of chromosomes in Microtus kirgisorum (Muridae, Rodentia)

1 reference

https://pubmed.ncbi.nlm.nih.gov/11337478

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High-resolution G-banding of chromosomes in Microtus subarvalis (Rodentia, Arvicolidae)

1 reference

https://pubmed.ncbi.nlm.nih.gov/11337478

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High-resolution G-banding of chromosones in the common vole Microtus arvalis (Rodentia, Arvicolidae)

1 reference

https://pubmed.ncbi.nlm.nih.gov/11337478

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Xist-deficient mice are defective in dosage compensation but not spermatogenesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/11337478

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

XIST expression from the maternal X chromosome in human male preimplantation embryos at the blastocyst stage

1 reference

https://pubmed.ncbi.nlm.nih.gov/11337478

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative mapping of X chromosomes in vole species of the genus Microtus

1 reference

https://pubmed.ncbi.nlm.nih.gov/11337478

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Controlling elements in the mouse X-chromosome. I. Interaction with the X-linked genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/11337478

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Controlling elements in the mouse X-chromosome. II. Location in the linkage map

1 reference

https://pubmed.ncbi.nlm.nih.gov/11337478

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Controlling elements in the mouse: IV. Evidence of non-randomX-inactivation

1 reference

https://pubmed.ncbi.nlm.nih.gov/11337478

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Non-random inactivation of the X-chromosome in interspecific hybrid voles

1 reference

https://pubmed.ncbi.nlm.nih.gov/11337478

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1101/GR.174901

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11337478%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11337478%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11337478%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

ResearchGate publication ID

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