(Q29542735)

22 April 2017

author name string

D. M. Simon

series ordinal

1

1 reference

22 April 2017

S. Zimmerly

series ordinal

2

1 reference

22 April 2017

language of work or name

English

0 references

publication date

12 November 2008

1 reference

22 April 2017

published in

Nucleic Acids Research

1 reference

22 April 2017

volume

36

1 reference

22 April 2017

issue

22

1 reference

22 April 2017

page(s)

7219-7229

1 reference

A rapid bootstrap algorithm for the RAxML Web servers

22 April 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Small CRISPR RNAs guide antiviral defense in prokaryotes

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Diversity-generating retroelements

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

The frailty of adaptive hypotheses for the origins of organismal complexity

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Retrons, msDNA, and the bacterial genome

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

HIV-1: fifteen proteins and an RNA

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Evolutionary relationships among group II intron-encoded proteins and identification of a conserved domain that may be related to maturase function

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Reverse transcriptase in a clinical strain of Escherichia coli: production of branched RNA-linked msDNA

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaea

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

A telomeric sequence in the RNA of Tetrahymena telomerase required for telomere repeat synthesis

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Origin and evolution of retroelements based upon their reverse transcriptase sequences

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Phylogenetic profiles reveal evolutionary relationships within the "twilight zone" of sequence similarity

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Group II introns in eubacteria and archaea: ORF-less introns and new varieties

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Abortive phage resistance mechanism AbiZ speeds the lysis clock to cause premature lysis of phage-infected Lactococcus lactis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Fitness cost of LINE-1 (L1) activity in humans

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Identification of a gene encoding a functional reverse transcriptase within a highly variable locus in the P2-like coliphages

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Structure and architecture of the maize genome.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Abundance, distribution and dynamics of retrotransposable elements and transposons: similarities and differences.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Expression and site-directed mutagenesis of the lactococcal abortive phage infection protein AbiK.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Domain structure and three-dimensional model of a group II intron-encoded reverse transcriptase

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

3 June 2018

Mobile group II introns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

The unusual phylogenetic distribution of retrotransposons: a hypothesis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Group II intron mobility using nascent strands at DNA replication forks to prime reverse transcription

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

3 June 2018

The msDNAs of bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Phylogenetic relationships among group II intron ORFs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Bacteriophage defence systems in lactic acid bacteria

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Highly Specific Recognition of Primer RNA Structures for 2'-OH Priming Reaction by Bacterial Reverse Transcriptases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

The age and evolution of non-LTR retrotransposable elements

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Reversing time: origin of telomerase

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Transposons in place of telomeric repeats at a Drosophila telomere

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Amino acid sequence motif of group I intron endonucleases is conserved in open reading frames of group II introns

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Diversity of retron elements in a population of rhizobia and other gram-negative bacteria

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Viral RNA-dependent DNA Polymerase: RNA-dependent DNA Polymerase in Virions of Rous Sarcoma Virus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

RNA-dependent DNA polymerase in virions of RNA tumour viruses

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Reverse transcriptase-dependent synthesis of a covalently linked, branched DNA-RNA compound in E. coli B.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Retronphage φR73: an E. coli Phage That Contains a Retroelement and Integrates Into a tRNA Gene

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Phylogenetic distribution of branched RNA-linked multicopy single-stranded DNA among natural isolates of Escherichia coli

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Accumulation of transposable elements in the genome of Drosophila melanogaster is associated with a decrease in fitness.

3 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN867

Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1 (supplement).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN867

Retrotransposition of the Ll.LtrB group II intron proceeds predominantly via reverse splicing into DNA targets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN867

Reverse transcriptase-mediated tropism switching in Bordetella bacteriophage

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN867

Systematic survey for novel types of prokaryotic retroelements based on gene neighborhood and protein architecture.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN867

Reverse transcriptases. Retrons in bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN867

rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKN867

Telomerase and retrotransposons: which came first?

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Promiscuous mitochondrial group II intron sequences in plant nuclear genomes.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602772

Group II intron mobility occurs by target DNA-primed reverse transcription

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19004871

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKN867

2 references

22 April 2017

4188761

4188761

1 reference

1 reference

1 reference