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Ribosomal RNA processing 40 Dmel_CG31938
Protein found in Drosophila melanogaster
Rrp40
Rrp40-PB
CG31938-PB
ribosomal RNA processing 40
CG31938 gene product from transcript CG31938-RB
CG31938-PA
Rrp40-PA
In more languages
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Statements
instance of
protein
1 reference
stated in
UniProt
retrieved
25 May 2022
UniProt protein ID
Q8IPX7
part of
Nucleic acid-binding, OB-fold
1 reference
stated in
InterPro Release 71.0
reference URL
http://www.ebi.ac.uk/interpro/protein/Q8IPX7
Exosome complex RNA-binding protein 1/RRP40/RRP4
1 reference
stated in
InterPro Release 71.0
reference URL
http://www.ebi.ac.uk/interpro/protein/Q8IPX7
K Homology domain, type 1 superfamily
1 reference
stated in
InterPro Release 71.0
reference URL
http://www.ebi.ac.uk/interpro/protein/Q8IPX7
Rrp40, S1 domain, protein family
1 reference
based on heuristic
inferred from protein domain or family
K Homology domain, type 1, protein family
1 reference
based on heuristic
inferred from protein domain or family
found in taxon
Drosophila melanogaster
1 reference
stated in
UniProt
retrieved
25 May 2022
UniProt protein ID
Q8IPX7
encoded by
Rrp40
1 reference
stated in
UniProt
retrieved
25 May 2022
UniProt protein ID
Q8IPX7
molecular function
RNA binding
determination method
IBA
IEA
2 references
retrieved
8 April 2019
stated in
GOA
curator
InterPro
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q8IPX7
determination method
IEA
retrieved
8 April 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q8IPX7
determination method
IBA
cell component
nuclear exosome (RNase complex)
determination method
IDA
ISS
2 references
retrieved
16 July 2018
stated in
The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila
GOA
curator
FlyBase
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=Q8IPX7&geneProductId=UniProtKB:Q8IPX7
determination method
ISS
retrieved
16 July 2018
stated in
The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila
GOA
curator
FlyBase
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=Q8IPX7&geneProductId=UniProtKB:Q8IPX7
determination method
IDA
cytoplasmic exosome (RNase complex)
determination method
IBA
1 reference
retrieved
8 April 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q8IPX7
determination method
IBA
exosome (RNase complex)
determination method
IDA
IEA
2 references
retrieved
16 July 2018
stated in
GOA
curator
InterPro
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=Q8IPX7&geneProductId=UniProtKB:Q8IPX7
determination method
IEA
retrieved
16 July 2018
stated in
An efficient protein complex purification method for functional proteomics in higher eukaryotes
GOA
curator
FlyBase
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=Q8IPX7&geneProductId=UniProtKB:Q8IPX7
determination method
IDA
cytoplasm
determination method
IDA
1 reference
retrieved
8 April 2019
stated in
Differential distribution of exosome subunits at the nuclear lamina and in cytoplasmic foci.
GOA
curator
FlyBase
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q8IPX7
determination method
IDA
nuclear exosome (RNase complex)
determination method
IBA
IDA
ISS
3 references
retrieved
8 April 2019
stated in
The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila
GOA
curator
FlyBase
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q8IPX7
determination method
ISS
retrieved
8 April 2019
stated in
The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila
GOA
curator
FlyBase
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q8IPX7
determination method
IDA
retrieved
8 April 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q8IPX7
determination method
IBA
exosome (RNase complex)
determination method
IBA
IDA
IEA
3 references
retrieved
8 April 2019
stated in
GOA
curator
InterPro
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q8IPX7
determination method
IEA
retrieved
8 April 2019
stated in
An efficient protein complex purification method for functional proteomics in higher eukaryotes
GOA
curator
FlyBase
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q8IPX7
determination method
IDA
retrieved
8 April 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q8IPX7
determination method
IBA
biological process
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
determination method
IBA
1 reference
retrieved
8 April 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q8IPX7
determination method
IBA
regulation of gene expression
determination method
IMP
1 reference
retrieved
8 April 2019
stated in
Genome-wide analysis reveals distinct substrate specificities of Rrp6, Dis3, and core exosome subunits
GOA
curator
FlyBase
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q8IPX7
determination method
IMP
nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
determination method
IBA
1 reference
retrieved
8 April 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q8IPX7
determination method
IBA
U4 snRNA 3'-end processing
determination method
IBA
1 reference
retrieved
8 April 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q8IPX7
determination method
IBA
larval lymph gland hemopoiesis
determination method
IMP
1 reference
retrieved
8 April 2019
stated in
Pvr expression regulators in equilibrium signal control and maintenance of Drosophila blood progenitors
GOA
curator
FlyBase
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q8IPX7
determination method
IMP
exonucleolytic catabolism of deadenylated mRNA
determination method
IBA
1 reference
retrieved
8 April 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q8IPX7
determination method
IBA
CUT catabolic process
determination method
IBA
1 reference
retrieved
8 April 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q8IPX7
determination method
IBA
nuclear polyadenylation-dependent rRNA catabolic process
determination method
IBA
1 reference
retrieved
8 April 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q8IPX7
determination method
IBA
nuclear polyadenylation-dependent tRNA catabolic process
determination method
IBA
1 reference
retrieved
8 April 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q8IPX7
determination method
IBA
polyadenylation-dependent snoRNA 3'-end processing
determination method
IBA
1 reference
retrieved
8 April 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:Q8IPX7
determination method
IBA
has part(s)
K Homology domain, type 1
1 reference
stated in
InterPro Release 71.0
reference URL
http://www.ebi.ac.uk/interpro/protein/Q8IPX7
Rrp40, S1 domain
1 reference
stated in
InterPro Release 71.0
reference URL
http://www.ebi.ac.uk/interpro/protein/Q8IPX7
Identifiers
RefSeq protein ID
NP_001285565
1 reference
stated in
NCBI Gene
retrieved
20 March 2022
Entrez Gene ID
319033
NP_722725
1 reference
stated in
NCBI Gene
retrieved
20 March 2022
Entrez Gene ID
319033
UniProt protein ID
Q8IPX7
1 reference
stated in
UniProt
retrieved
25 May 2022
UniProt protein ID
Q8IPX7
Ensembl protein ID
FBpp0311555
1 reference
stated in
ensembl Release 106
Ensembl protein ID
FBpp0311555
FBpp0077551
1 reference
stated in
ensembl Release 106
Ensembl protein ID
FBpp0077551
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