(Q29950565)

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Consed: a graphical editor for next-generation sequencing

2013 scientific article

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instance of

scholarly article

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title

Consed: a graphical editor for next-generation sequencing (English)

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main subject

computational mathematics

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author name string

David Gordon

series ordinal

1

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Phil Green

series ordinal

2

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language of work or name

English

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publication date

15 November 2013

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1 reference

29

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issue

22

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page(s)

2936-7

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uses

Consed

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reference URL

https://www.ncbi.nlm.nih.gov/pubmed/23995391

retrieved

15 May 2017

cites work

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810858

retrieved

16 May 2017

The variant call format and VCFtools

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810858

retrieved

16 May 2017

Gap5--editing the billion fragment sequence assembly

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810858

retrieved

16 May 2017

The Sequence Alignment/Map format and SAMtools

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810858

retrieved

16 May 2017

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810858

retrieved

16 May 2017

Mapping short DNA sequencing reads and calling variants using mapping quality scores

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810858

retrieved

16 May 2017

Next-generation DNA sequencing methods

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810858

retrieved

16 May 2017

Viewing and editing assembled sequences using Consed

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810858

retrieved

16 May 2017

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810858

retrieved

16 May 2017

The human genome browser at UCSC

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810858

retrieved

16 May 2017

Automated finishing with autofinish

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810858

retrieved

16 May 2017

Consed: a graphical tool for sequence finishing

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810858

retrieved

16 May 2017

Base-calling of automated sequencer traces using phred. II. Error probabilities

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810858

retrieved

16 May 2017

A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810858

retrieved

3 June 2018

Visualizing genomes: techniques and challenges

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810858

retrieved

3 June 2018

Hawkeye: an interactive visual analytics tool for genome assemblies

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810858

retrieved

3 June 2018

A sequence assembly and editing program for efficient management of large projects

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3810858

retrieved

3 June 2018

Identifiers

DOI

10.1093/BIOINFORMATICS/BTT515

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

213323

DBLP publication ID

journals/bioinformatics/GordonG13

1 reference

stated in

DBLP Dataset 2021-01-02

retrieved

28 January 2021

OpenCitations bibliographic resource ID

213323

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

213323

PubMed publication ID

23995391

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

213323

ResearchGate publication ID

256331989

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(Q29950565)

Consed: a graphical editor for next-generation sequencing

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