(Q30157634)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18633653%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

title

Continuous metadynamics in essential coordinates as a tool for free energy modelling of conformational changes (English)

1 reference

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10 January 2020

1

1 reference

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10 January 2020

author name string

Blanka Králová

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18633653%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

Igor Tvaroska

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18633653%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

publication date

17 July 2008

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18633653%20AND%20SRC:MED&resulttype=core&format=json

Journal of Molecular Modeling

10 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18633653%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

volume

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18633653%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

issue

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18633653%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

page(s)

995-1002

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18633653%20AND%20SRC:MED&resulttype=core&format=json

An efficient method for sampling the essential subspace of proteins.

10 January 2020

cites work

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS00894-008-0343-7

Toward an exhaustive sampling of the configurational spaces of the two forms of the peptide hormone guanylin.

21 January 2018

1 reference

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https://api.crossref.org/works/10.1007%2FS00894-008-0343-7

GROMACS 3.0: a package for molecular simulation and trajectory analysis

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS00894-008-0343-7

Role of protein dynamics in reaction rate enhancement by enzymes.

21 January 2018

1 reference

12 December 2020

Paxillin and ponsin interact in nascent costameres of muscle cells

1 reference

12 December 2020

Escaping free-energy minima

1 reference

12 December 2020

Assessing the Accuracy of Metadynamics†

1 reference

12 December 2020

Flooding inGROMACS: Accelerated barrier crossings in molecular dynamics

1 reference

12 December 2020

Normal mode analysis with simplified models to investigate the global dynamics of biological systems.

1 reference

12 December 2020

A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6

1 reference

12 December 2020

Metadynamics simulation of prion protein: beta-structure stability and the early stages of misfolding.

1 reference

12 December 2020

Flexible docking in solution using metadynamics

1 reference

12 December 2020

Essential dynamics of proteins

1 reference

12 December 2020

Comprehensive analysis of protein folding activation thermodynamics reveals a universal behavior violated by kinetically stable proteases

1 reference

12 December 2020

The conformational free energy landscape of beta-D-glucopyranose. Implications for substrate preactivation in beta-glucoside hydrolases

1 reference

12 December 2020

Efficient reconstruction of complex free energy landscapes by multiple walkers metadynamics.

1 reference

12 December 2020

Does water play a structural role in the folding of small nucleic acids?

1 reference

12 December 2020

The essential dynamics of thermolysin: Confirmation of the hinge-bending motion and comparison of simulations in vacuum and water

1 reference

12 December 2020

Anisotropy of Earth's D″ layer and stacking faults in the MgSiO3 post-perovskite phase

1 reference

12 December 2020

A simplified representation of protein conformations for rapid simulation of protein folding

1 reference

12 December 2020

Dynamic coupling between the SH2 and SH3 domains of c-Src and Hck underlies their inactivation by C-terminal tyrosine phosphorylation

1 reference

12 December 2020

Full correlation analysis of conformational protein dynamics

1 reference

12 December 2020

Azulene-to-naphthalene rearrangement: the Car-Parrinello metadynamics method explores various reaction mechanisms.

1 reference

12 December 2020

Metadynamics in essential coordinates: free energy simulation of conformational changes.

1 reference

12 December 2020

Efficient exploration of reactive potential energy surfaces using Car-Parrinello molecular dynamics.

1 reference

12 December 2020

Using metadynamics to understand the mechanism of calmodulin/target recognition at atomic detail

1 reference

12 December 2020